Diachasma alloeum: 107041124
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Entry
107041124 CDS
T07663
Name
(RefSeq) uncharacterized protein LOC107041124
KO
K15542
polyadenylation factor subunit 2
Organism
dam
Diachasma alloeum
Pathway
dam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107041124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dam03019
]
107041124
Messenger RNA biogenesis [BR:
dam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107041124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_RFWD3
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR41
Beta-prop_WDR11_2nd
WD_LRWD1
Beta-prop_SPT8
Beta-prop_ACSF4
WDR54
Motif
Other DBs
NCBI-GeneID:
107041124
NCBI-ProteinID:
XP_015117012
LinkDB
All DBs
Position
Unknown
AA seq
1057 aa
AA seq
DB search
MSANAQFASPPPVINLPNMSVPPPTTPNLSAPPPNLTTINTSGGYQHRFNNHREGRGFFK
PFRPYHAPKVISGGQDALQDEFDGKRLRKSVMRKTVDYNSAIIKSLENRVWQRDYRDRRA
LQPDVMYYPDLLPPPSYVDNPINAVTTRFVKTATNKMRCPIFCMAWTPEGRRLVTGASSG
EFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQSNMNNVKMFQAH
KEAIRGLSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVIS
GSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDVKWNENGNWLVTASRDHLLKLFDLRNLS
QEVQTFRGHKKEASSVAWHPSHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIVWTL
AWHPLGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGACGIDDHEIADEAAVIPG
MGPEDKINTDIELEEENNAAGITGIPGLDLDHAVDESKKLASKKVPYSKPIPRNFQAQWN
EMEAEDPEQVEALNAIVNQLIETTPGAVPLNEVTPNAIILYGKMVPVEPGSKLADAILRG
NDAINKLVTAGEIEELKDVALTVPEPIEDPEDFLQDDGDIDYSKVPDIDLPPPLPSSKFA
QNPELLKALNRGGKRKFDQLIGWSESNDKNSRLHQPVFGGSTLEDSCNSDTDLRHMMHLT
GVDMAAYLAQDEDLRRLNSLDRMNNIGNMNINSINRDEDLRFGGGSSGPGRPDFDGRNSF
GDRDFRPNVPPPNFKPSNLDGDSYGDSDNRPRPWDDDNDNRNFDKRDMISSALGNPQLGS
LSLQMGGLSSGVNHLNANHHNMQNISPNMPPTMGLAGNMGLNSSLQSKSNNLMGSGMADG
LPPHMMHMPPNFGPNGPNGPNGSQLPPNFNPNLRPPNGNFPGNHQFRPMGPFAHNNFGNF
QGPPGFRCPNPNNPPPNFERGGFGPNFRGQMGGSGGGSGGFNSGFNNKNFGGGNNGGGKS
GGRGMGRSNDNNRSSYGGRGRGRDGEGSRGSRGRDNY
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgaatgcacagtttgcaagcccaccaccggtgattaatctgccgaatatgtcg
gtgccacctcctaccacaccgaatttatcagcaccaccacccaatttaacgaccatcaat
acctctggagggtatcagcatcgatttaataatcatagggagggacgggggttcttcaag
cccttcaggccttatcatgcacccaaagttatttctggggggcaggacgcattgcaagat
gaattcgatgggaagagactgaggaaatctgttatgaggaagactgtcgattataattcg
gccattatcaagagtttggagaatcgagtttggcagagagactacagagatcgacgtgct
ctccagccagatgttatgtactaccccgacctcctcccaccacccagctacgtcgacaat
ccaataaatgctgttacaactcgtttcgttaaaacagcaacaaataaaatgcgttgtcct
atattttgcatggcgtggacaccagagggtagaagattagtcactggtgcctccagtggt
gaatttacactttggaatggattgacgttcaattttgaaacgattcttcaggctcatgac
agtccagttagaacgatggtgtggtcacacaacgagagctggatggtcactggtgatcat
gctggatacgtcaagtactggcagagcaacatgaacaacgtaaagatgtttcaggcccac
aaagaagcgattagaggactcagtttcagtccaacggatcacaaattggcgacgtgcagt
gatgatggaaccgtaagaatttgggactttctacggtgtcacgaggaaagaattctcagg
ggtcacggagcagatgtgaaatgtgtgcactggcacccgcagaagagtctagtcatctcg
ggaagtaaagacaatcagcagccggtgaagctgtgggatccaaagactggacagtctctg
gctactttgcatgctcacaagagcacagttatggacgttaaatggaacgagaatggtaac
tggttggtcacagcctccagggatcatctgctcaagcttttcgatctgcggaatttgagt
caagaggtgcagacattcaggggacataagaaggaggcatccagtgttgcttggcatccc
agccatgaggggctcttctgcagtggtggaagcgatggagctatattattttggcatgtt
ggagctgacaaggaagtgggggctatcgaacaggctcacgatagcatcgtatggacacta
gcatggcatccactgggtcacattctctgttcaggaagtaatgatcacacgtccaagttc
tggacgagaaacagacctggggacttgatgagggataaatataatctcaacactttgccg
gctggtgcttgcggaatcgatgatcacgaaatagctgatgaagcagcagtgataccggga
atgggcccagaagacaaaataaacacagatattgaactggaggaggagaataatgcggca
ggaatcacaggaattcctggtttagacctagatcatgccgtcgacgagagcaagaaactg
gcgagcaagaaagtcccatattccaagccaattccaagaaatttccaagcccagtggaac
gaaatggaggctgaggatccagagcaagtcgaggcactgaatgccatcgtcaatcaactc
attgagacgaccccaggcgctgtgcctctcaatgaagtcaccccaaatgctattattttg
tacggaaaaatggtccctgttgaaccgggttccaagctagcagacgccattctcagagga
aacgacgccatcaacaagctggtaacagctggtgaaatagaagagctaaaagacgtcgca
ctaaccgtcccagagcccatcgaggatcccgaggacttcctccaggacgacggtgacatt
gactactccaaggtcccagacattgacctcccgccaccgctcccctcctcaaaattcgcc
cagaatccggagctcctcaaggcactgaaccgcggtggtaaacgaaagttcgatcaattg
atcggttggtcagagagcaacgacaaaaactcccgcctccaccagccagtcttcgggggc
tcgacactggaggactcctgcaacagcgacacagatctccgccacatgatgcacttaaca
ggtgtcgacatggcggcctacctggcgcaagacgaagacctcagaagattgaacagcctc
gacagaatgaacaacatcggcaacatgaacatcaacagcataaacagggacgaggatctg
cgcttcggtggtggctcaagtgggcccggaaggcctgacttcgacggacgtaattccttc
ggggaccgggacttccggcccaacgtcccaccccccaacttcaaaccctccaatctggat
ggagacagctacggagacagtgacaacaggccccggccttgggacgacgacaatgacaac
cgaaacttcgacaaacgagacatgatctcttcagccctgggaaatccacagctgggctcg
ttatccctgcaaatggggggcctatcgtccggtgtcaatcatctcaacgccaatcaccac
aatatgcagaatatttcacccaatatgccaccgacaatgggccttgctggcaatatggga
ctgaattcttctctccaaagtaaaagtaataatcttatgggcagtggtatggccgatggt
ctgccccctcacatgatgcatatgccccccaactttgggcccaatgggcccaacggaccc
aatggatcgcaattaccaccgaatttcaatcccaatttacgaccaccaaatggcaatttc
cctgggaatcatcagttcaggcccatggggccctttgcacacaataattttggaaacttt
cagggcccacctggtttcagatgtcccaatcccaataatcctccccccaattttgagagg
ggtggcttcggacccaatttcaggggacagatgggcggcagtggtgggggcagtggtgga
ttcaattcgggatttaataataaaaattttggagggggcaacaacggcggggggaagagt
gggggcaggggaatggggaggagtaatgacaataacaggagtagttacggtgggagaggg
aggggaagggacggcgaagggtccagggggtccagggggagggataactattga
DBGET
integrated database retrieval system
