Diachasma alloeum: 107042861
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Entry
107042861 CDS
T07663
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dam
Diachasma alloeum
Pathway
dam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107042861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dam03041
]
107042861
Enzymes [BR:
dam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107042861
Spliceosome [BR:
dam03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107042861
Complex C
U5 SnRNP specific factors
107042861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107042861
NCBI-ProteinID:
XP_015119554
LinkDB
All DBs
Position
Unknown
AA seq
2133 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLGALKSDRQDKDKKKETELLLGPLADERFALLVNLGKKITD
FGNEEKNPTSEENIDETYGINVQFEESSEEDDEDVYGEVRENDDDGDEGEEANDDRLIHA
ENLGGTEEAKKEKTLHPLDIDAYWLQRRLSRIYKDAVESQARAAQVLNVLKDAPSDRQCE
NDLVGLLGYDCFDFIKQLMKQRHMIAYCTMLASSQSESDRQKIRDSMKDDPALAKILRQL
DTGKNDDDGNETMEARAQRKRREEKEDTGGPGGQVQGTRNIVDLEDLVFTQGSHFIANKR
CKLPDRSFRKQRKGYEEVHVPALKPKPFGENEKLHPIDHLPKYVQPAFEGFKTLNRIQSR
LHNTALNSDENLLLCAPTGAGKTNVALLTMMREIGKHINDDGTINAEEFKIIYIAPMRSL
VQEMTGNFGKRLSSYNITVSELTGDHQLTREQIAASQVIVCTPEKWDVITRKGGDKTFTS
LVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYEDVAAFLRI
KPETGLFYFDNSFRPVALEQQYIGVTEKKAIKRFQVMNEIVYEKTMLHAGKNQVLIFVHS
RKETGKTARAIRDMCLEKDTLGAFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHHA
GMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGAL
DVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQMIGKMADMLNAEIVL
GTIQNIRDAVIWLGYTYLFIRMLRGPNLYGISGDKLKEDPLLELHRADLIHSAAIQLDRS
GLIKYDRKSGNFQSTELGRIASHYYCTHETMSTYNLLLKRTLSEIELFRVFSLSGEFKNI
NVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQS
ASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMTPLRQFRKMPEEVVKRIEKKN
FPWERLYDLGPNEIGELIRMPKLGKTIHKYIHQFPKLDLSTHIQPITRSTLRVELTITPD
FQWDDKVHGASEAFWILVEDVDSEVILHHEFFLLKAKYASDEHLIKFFVPVFEPLPPHYF
LRIVSDRWIGSETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNPKFESLYSDKFPQ
FNPIQTQVFNAVYNSDDNVFVGAPTGSGKTIIAEFAVLRLLSQKPDGRCVYMVSKQALAE
LVYTDWLVKFNHRLGHKIVLLTGETGTDLKLIAKAQIIVTTADKWDVLSRRWKQRKNVQN
VQLFIVDELQLIGGEEGPVLEVACSRARYIALQLERPTRIVALSAPLADAKDAAAWLDAQ
AAATFNFHPSVRPIPLELHVQGINITHNASRLAAMAKPVYNAILRHAPHKPVIIFVPTRR
QARLTAFDLLTFAAAEGQKTKFFHAEEADIKPFLDRMSDKTLKETLSQGVAYLHEGLSSD
DRHLVEQLFESGAIQVAVATRDLCWGLSISSHLVVIMDTQCYNGKTHAYEDYPITDVLQM
VGRANRPLEDDDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIEN
KQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVENTLGDLEQAKCVAIEDD
MDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIIAAAAEYENVPVRQREENL
LRSLAQRLPHAPQAQRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLSKAIRLIQACV
DVLSSSGWLTPAVAAMELAQMMTQAMWSKDSYLKQLPHFTAETIKRCTDKGVENVFDVME
LEDEDRNRLLQLTDVQMADVAKFCNRYPNIEMSYEVQDKDRVYSGRTVNVIVQLEREDDV
TGPVVAPFFPQRREEGWWVVIGDPKTNSLLSIKRLTLQQTATVKLDFVAPAPGQHGYTLY
FMSDAYLGCDQEYKFNINVGEYESEGSSASDSE
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcagcggcacgacaactccaatacgaatacaaagccaattctaatcttgtg
cttcaagctgatgtgcgattgatagaacgtcgaagtcgagatgaagccaccggtgaggtc
atgtcccttgtgggcaaattggatgggacgaggatgggtgacagagcccagagaacaaaa
cctggaaaagctgaagagcgtaaagtcaagcgtcaaaaacgtgacgaagcgcagtacgat
ttcacccggatgaaaggagctaccctcctctcagaaggtgtagacgagatggtgggaata
gtctaccgcccaaagacccaagaaacccgtcaaacctacgaagtcctcctgagcttcatc
caagaggccctcggcgatcagccccgcgacattctttgcggtgcagccgacgaggtccta
ggagccctcaaaagcgaccgtcaggataaagacaagaagaaagaaacagaacttctcctg
gggcccctcgcagacgagcgattcgctttactagtgaaccttggcaagaagatcacagac
ttcggtaacgaagagaagaacccaacaagcgaggagaatatcgacgagacctacggcata
aacgttcagttcgaagagagcagtgaggaggacgacgaggacgtttacggagaggtcagg
gagaacgacgacgatggggacgagggtgaagaggccaacgacgatcgtctgattcacgct
gagaacctcggagggacagaagaagccaagaaggagaaaaccctgcaccccttggacatc
gacgcctactggctccagcgaagacttagcagaatctacaaggacgctgtggagtcccag
gctcgagctgctcaggtcctcaatgtcctgaaggacgccccaagtgatcgtcaatgcgaa
aacgacctcgttggtctcctgggctacgactgcttcgatttcatcaagcaactgatgaaa
caacgccacatgatcgcgtactgcacaatgctagcctcatctcaatcggaatcagaccgt
cagaagatacgtgacagcatgaaggatgatcctgcattagctaaaattcttcgacaatta
gacactggtaaaaatgatgatgatgggaacgaaacaatggaagcaagagcacagagaaaa
aggagagaggagaaggaagacacaggaggtcctggaggtcaagttcaagggaccaggaac
atcgtagacttggaggaccttgttttcacacagggcagccacttcattgccaacaaaagg
tgtaagttgcccgataggagcttcagaaaacagaggaaggggtatgaagaggtgcatgtg
ccagccctgaagcccaagccatttggagaaaatgagaaactccatcccatcgatcatctc
ccaaaatacgttcagcctgctttcgagggtttcaagaccctgaatagaatacaaagcaga
cttcataatacagctctgaatagtgatgagaatctgttgttgtgtgccccaacaggtgca
ggaaaaactaatgttgctttgttgaccatgatgagggagattggaaaacacataaatgac
gatggcaccatcaatgctgaggaattcaagataatctacatagctccaatgcgttcactc
gtacaagagatgactggtaattttgggaaacgtctttccagctacaacataacagtctca
gaattgactggagatcaccaactgacgagggagcagatagctgccagtcaggtgattgtt
tgcacccctgagaaatgggatgtcatcacgaggaagggtggggacaagacgtttacgtct
ttagtgaggttaatcatcattgatgaaatccatttgcttcatgacgaacgaggacctgtc
ctggaggctcttgtggctagaactatcaggaacattgagacgactcaagaggatgttcgt
ctggttggtctgtctgctactcttcctaactacgaagacgtagctgcttttctgagaata
aaacctgaaactggattgttctactttgacaacagcttcagaccagtagctctggagcaa
cagtacatcggtgtcactgagaagaaggctattaaacgttttcaggtgatgaatgagatt
gtttacgagaagacaatgcttcatgcaggtaagaaccaagtcttgatctttgtgcattcg
agaaaagaaactgggaagacagctagggctatcagagacatgtgtctggagaaagacacc
ttgggggcgttcttaagagaagggtcagcatcgatggaagtcctcaggactgaagctgaa
caggtgaagaatcaagagttgaaggatttattgccatatggatttgccattcatcacgcc
ggtatgacaagagtcgacaggactctagtggaagatttgtttgctgacagacacattcag
gttcttgtgtccactgcaactcttgcttggggtgtcaacttaccagctcacactgtcatc
atcaagggaacacaaatttataatcctgagaagggacgatgggtggagcttggagctcta
gatgtcctccagatgctggggcgtgctggtagacctcagtatgacaccaaaggcgaggga
atactgataacaaatcatagtgaactacagtattacctttcactgctgaaccaacaactg
cccattgagtcacagatgattgggaagatggctgacatgttgaatgctgagattgtccta
gggacaattcagaacatcagagatgctgtcatttggttgggatacacttacctcttcata
agaatgctgaggggtcctaatttgtatgggatcagtggagacaagcttaaagaggatcca
ctgctggagctccatcgagctgatctcatacattctgctgctattcagcttgatcgaagt
ggcttgatcaaatacgacaggaaatccggaaatttccagtcaactgaactaggaagaatc
gcttcgcattactactgcacccacgagaccatgtccacgtacaatctgttgttaaagaga
acattgagtgagattgaattgttcagagtgttctcgctctctggggagtttaagaacatc
aatgtgcgcgaggaggagaagttggagctgcagaaactgatggaaagggttccaattccc
ataaaagagagcattgaagaacctagtgccaaagtgaacgttcttcttcaggcttacatc
tcacaattgaagctcgagggctttgcattgatgtctgacatggtttttgtgactcagtca
gcatctaggctgatgagagctatcttcgagattgttttgttcagagggtgggcacaattg
gctgacaagtgtttgtcattatgcaaaatgattgatagaaggatgtggcagtctatgaca
cctcttcgtcaattcagaaaaatgcctgaggaggttgtcaagaggatcgagaagaagaac
ttcccttgggagagactctatgatctcgggccgaatgagattggcgagcttattcgaatg
ccgaaacttggaaaaactattcacaagtacattcatcagttccctaaattggatttgtcc
actcatattcaacccatcaccagatcaacattgagagtggaactaacaataaccccggac
ttccagtgggatgacaaggtccatggagcctcagaagcattctggatccttgtggaagac
gtcgactcagaagtcatcctccatcacgagtttttcttgctgaaagctaaatatgcgagt
gatgaacacttgataaagttctttgtcccagtattcgagcctcttccacctcattatttt
ctgaggatcgtgtcagacaggtggattgggtcagagacacagttgcctgtgagcttcagg
catctgattctccccgagaagaaccttccaccaactgaattgctggatctccaacctctc
cccatcacagctctcaggaaccccaagttcgaaagcctgtactctgataaatttccacag
ttcaaccccatccaaactcaagtattcaacgcagtctacaattcagacgacaatgtcttc
gtgggtgcacccacaggttctggcaagacgataatagcagagttcgctgttctgagatta
ctctcccagaaaccagacggcagatgtgtctacatggtgagcaagcaggcccttgcagag
ctagtttatacggattggttggtcaaattcaatcatcgcctgggccacaagatagtcttg
ctgacaggtgagactggaactgatctgaagctcatcgcaaaggctcagataattgtgaca
actgctgacaagtgggatgtgctttcgcgaagatggaaacaacgtaagaacgtccagaac
gttcaacttttcatcgtcgacgagctgcagttgattggaggggaggagggaccagtcctc
gaagtggcatgttcacgagcaagatacattgccctccaactcgaaagaccaacaagaata
gttgcactgtcagctccactggctgacgccaaggacgcagcagcttggctggatgctcag
gcagcagcaacctttaacttccatccatcagtcagaccaatcccccttgaactccacgtc
caggggatcaacatcactcacaacgcctctcgacttgctgcaatggccaagccagtctac
aacgccatccttcgtcatgctccccataaacccgtcatcatatttgtcccgacaagaaga
caagcgaggctaacagcctttgatttgttaacatttgcagctgctgaaggacagaagaca
aagttcttccatgctgaagaggctgatatcaaacccttcctcgataggatgtctgataaa
acgttaaaggagactctctcccaaggagttgcgtatctgcacgaaggactgtccagtgac
gatcgtcacttggtggagcagttgttcgagagcggggctattcaggtagctgttgccact
cgagacctctgctgggggttatccatcagttcacatctggtggtgattatggacactcag
tgttacaatggtaaaactcatgcttatgaggactatcccatcacggatgtcctccagatg
gtgggacgagccaatcgaccacttgaagacgacgacgctaaatgtgttcttctctgtcaa
agctcgaagaaagacttcttcaagaagttcctgaatgaaccgttgccggtggagtctcat
ctggatcacaggctacatgatcacttcaatgctgagatcgtcacgaagacaatcgagaat
aaacaggacgcagtggactacctcacctggacattcctgtatcgaagattgacgcagaat
cctaactattatggcctgcagggggtgacccacagacatctgtctgatcatttatcagag
ctcgtggagaatactcttggcgacctggaacaggccaagtgtgtggccattgaggatgac
atggatactttgccactgaacttgggaatgatcgctgcttattactacatcaactatgca
actatcgagctgttcagtctgtccttgaacaataaaacgaagattcgtgggctgttggag
attatcgcagcagctgctgagtatgagaacgttcccgtaaggcagagagaggagaatctc
ctgaggagtttggctcagagactgccgcatgcaccacaggctcagagaatggccgatccc
catgtcaaggcacaattgttgcttcaggctcatttgtccaggattcaacttggtccagag
ctacagaaagacacggaattggtgctgagtaaggctatcaggctgattcaggcctgtgtt
gatgttctcagttcttcaggatggttgacgcctgctgttgctgccatggagctcgcccag
atgatgactcaagccatgtggtctaaggattcctacctcaagcagttgcctcactttact
gctgagaccatcaagaggtgcactgataagggtgtggagaatgttttcgatgttatggag
cttgaggatgaggaccggaataggcttctgcaactgactgatgtgcagatggcggatgtt
gctaaattctgcaatcgatatccgaatattgagatgtcttatgaggtgcaggataaggat
agagtttacagcgggagaactgtcaatgttattgttcaattggaacgtgaggacgatgtc
actggacccgttgtggccccattcttcccacagcgacgtgaggagggctggtgggtggtc
attggggatcccaagacgaattcattgctgtcaattaaacgactcacactacaacagact
gcaacggtgaaactcgattttgttgcacctgcccccggacagcatgggtacactttgtat
tttatgagtgatgcgtaccttgggtgcgatcaggagtacaagtttaatattaatgtagga
gagtatgagtcggaaggaagctcagcctccgactctgagtaa
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integrated database retrieval system
