Diachasma alloeum: 107044565
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Entry
107044565 CDS
T07663
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dam
Diachasma alloeum
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dam03016
]
107044565
Enzymes [BR:
dam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107044565
Transfer RNA biogenesis [BR:
dam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107044565
Prokaryotic type
tRNA splicing ligases
107044565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
107044565
NCBI-ProteinID:
XP_015121978
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELQYLEKLTDYSWRIKKGFQPNMKVEGIFYVNNTLEKLMLEELRNSCRPGQV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDINDPKSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQIAQSMFDHIPVGVGSKGIIPMKAQDLEEALEMGMDWS
LREGYSWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD
RSAACKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIEVNDRQLACAHIN
SQEGQDYLKSMAAAANFAWVNRSSMTFLTRQAFAKQFQMPPDDLDMHVIYDVSHNIAKVE
EHMVDGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGM
RETFGSTCHGAGRALSRAKSRRNLDYQQVLEKLEGQGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtaaggcaatatcaagaggagctccagtacctggagaagctcacagactacagt
tggaggataaaaaagggtttccaacccaacatgaaggtcgagggaattttttacgtgaac
aatacactggagaaactgatgctagaggagctcaggaactcctgcagacctggacaagtt
ggtggatttttgccaggtgttaaacaaatagctaatgttgctgcattacctggaatcgtt
gggaggtctgtgggtcttccagacgttcattctggatatggatttgccattggtaatatg
gcagcattcgatataaatgatccaaagtcaatagtatctccaggtggtgtaggttttgat
ataaattgtggggtacgtctgctacgtactaatttattcgaaaaagacgttcaaccagtc
aaggaacaaatagcccagagtatgtttgatcacatccccgtaggcgttggatcgaaagga
ataattccaatgaaggctcaggacctcgaggaagccctggagatgggaatggactggtca
ttgagggagggttacagttgggcagaggataaagagcattgtgaggaatatggaagaatg
ttgaatgctgatccctccaaggtctccatgagagctaaaaaacgaggcctaccccagtta
ggaaccctcggtgctggtaatcactacgcagagatccagattgttgacgaaatatacgac
agatcagcagcatgtaaaatgggaatagaggagaagggccaggtctgtgtgatgattcac
tctgggagtcgtggattcggtcatcaagtggccaccgatgccctagtacagatggagaaa
gcgatgaagagggataacatcgaagtcaacgacagacaacttgcgtgtgcccacatcaac
tcgcaggagggccaagattacctgaaatccatggctgcagctgccaatttcgcatgggtc
aacaggagttccatgacttttctcactcgacaggcatttgctaaacaattccagatgcct
cccgacgacctagacatgcacgtcatctacgatgtgtcccataatattgctaaagttgag
gaacatatggttgatggcaagttgaagacccttttggttcacagaaagggatctacaaga
gcatttccgcctcaccaccccctgatcccagtggactatcagctcacaggccagccagtg
ttgatcggtggtacaatgggcacttgcagttacgttctaacaggaactgatcaaggaatg
agggagacatttggatccacgtgtcatggagctggtcgagccctgtcccgagcaaaatcc
cgaagaaatttggactatcaacaagtcctggaaaaacttgagggccagggaatttccata
agagtcgcctccccaaaactggtgatggaagaggccccagagtcctacaaaaacgtgact
gatgttgtgaacacatgtcatgcagctgggatctccaagaagtgcatcaagctacgacca
atagctgttatcaagggctaa
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