Diachasma alloeum: 107044818
Help
Entry
107044818 CDS
T07663
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dam
Diachasma alloeum
Pathway
dam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107044818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dam03019
]
107044818
03041 Spliceosome [BR:
dam03041
]
107044818
Messenger RNA biogenesis [BR:
dam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107044818
Spliceosome [BR:
dam03041
]
Complex B
Other components
Prp19-related factors
107044818
Complex C
107044818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_8
TPR_2
ARM_TT21_C
TPR_12
Mad3_BUB1_I
TPR_10
ARM_TT21
RPN7
PPR
DHR-2_Lobe_A
TPR_7
Microp_apicomplexa_6
DUF3741
Motif
Other DBs
NCBI-GeneID:
107044818
NCBI-ProteinID:
XP_015122343
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MSEKIDSRGNTYVISEDDWPYEEEMLRNPYSMKHWQRYIDHLKNTKSPNLNVVFRRALEK
LPGSYKLWYNYLCNRRTQLKTKCIDDKMYEDVNNDYERALVFMHKMPRIWIEYCGLVTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYLEFVSKHDIAETAVRVFRRYLKLAPEDTEDY
IEYLVTIGRLDEAAVKLAYIVNQDDFVSKHGKSNHQLWNELCNLISKNPTKIKSLNVDAI
IRGGLRRYTDQLGPLWNALADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAANNPNPTPEDDIDLELRLARFEHLMDRRLLLLNSVMLRQNPHNVQEWHK
RVRLYENQPHEIISTYMEAVQTVQPQLAVGKLHTLWVSFAKFYEANNQLDDARAIFEEAT
RVPYTKVDDLASVWCAWAEMEIDHGNFNGALKLMHRATAMPSRRVAYHDESEAVQMRLYK
SLKVWCLYADLEECYGTFRTCKAVYDKIIDLKIATPHIIMSYGLFLEEKNYFEEAFRAYE
KGIALFKWPNVYDIWKRYLEKFLQRYGGEKLERTRDLFEQCLEHCPPKYAKTFYQLYAKF
EEEHGLKSRVMSVYERATEKVPNEEKFVMFNIYIEKAADIYGIPKTRQIYEKAIDVLNEE
NTREMSLRFADMETKLGEVDRARAIYSHCSQICDPRVTSNFWQVWKDFEVRHGNEDTMRE
MLRIKRSVQAMYNTQINMMSAQMLNTATSVQSHEIPDAMKLLDSKVAATGQTGAMLPKDT
ISFVRGVTEGGNKTSQVTNPDEIDIDIDEDDGDSEDEAQVEEEVPVEKQLIPSQVFGSLK
MNVDGNDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagaaaattgattctaggggcaacacttatgttatcagtgaagatgattggcca
tacgaagaagaaatgctccgcaatccctactccatgaagcactggcagcgctatattgat
cacctgaagaacacgaagtctccaaatctcaacgtcgtcttccgccgagcactggagaaa
cttccaggcagttacaaactctggtataactatctctgtaatcgtcgcactcaattaaaa
acgaaatgcatcgacgataagatgtacgaagacgtcaacaatgactacgaaagggccctc
gtgtttatgcacaagatgcccagaatttggatagaatactgtggtctcgtgacagagcaa
tgctatattacaagaactcgtcaagtattcgatcgagccctccgagccctccccatcacc
caacaccacaggatttggccgttatatctagagttcgtcagcaaacacgatatcgctgaa
acagcagtccgggtttttaggagatacttgaaattagcccctgaagacaccgaggattac
atcgagtatttagtcacgatcggacgactcgatgaagctgcagtaaagctcgcttacatc
gtgaatcaagatgacttcgtctcgaaacatgggaagtcgaatcatcaattatggaatgaa
ctttgcaacctcatctccaagaacccaacgaagataaaaagcttaaatgtcgacgcaatc
attagaggaggactcagaagatataccgatcaattaggacccctttggaatgccttggca
gactactatgtacgttctggtctattcgaacgagcacgtgacatttatgaagaagcaatc
caaacagtaactaccgtcagagattttactcaggtgttcgatgcttatgcacagtttgaa
gagcttagcctcagtaaacgaatggaagaggctgcgaacaatccaaatcctaccccagaa
gacgatattgatcttgaattgagattagccaggttcgaacacttaatggataggagatta
ttgcttctgaattctgttatgcttcgacaaaaccctcacaatgttcaggagtggcacaaa
cgtgtcagattatacgagaatcagccccatgagataatcagcacgtacatggaggcagtg
cagacagttcagcctcaactagctgttggaaaacttcataccctctgggtgtcatttgcg
aaattctacgaagctaataatcaattggatgatgccagagctatcttcgaagaggcgact
cgggttccctacacaaaagtcgatgatttagcttctgtttggtgtgcctgggcagagatg
gagatcgatcatggaaatttcaatggtgcattgaaactcatgcatcgagcaacagcaatg
ccttctcgaagagtggcttatcatgacgaatctgaggcagtccagatgagactttataaa
tctctgaaggtctggtgtctctacgcagatttggaagaatgttatggaactttcagaacc
tgcaaagctgtttacgataagatcattgacttgaaaattgccactccacacattattatg
agctatgggttgttcttagaggagaagaattacttcgaagaagcatttagagcgtatgag
aagggaatcgctttgttcaaatggccgaatgtttatgatatttggaagagatatcttgag
aagttcctgcagagatacgggggtgagaagttggagagaacgagggacttgtttgaacaa
tgcttggagcattgccccccaaaatatgcaaagacattttatcaactttatgctaaattc
gaagaagaacatggattgaagagtcgagttatgtcggtttatgagcgggccacagagaaa
gttcctaatgaggagaaattcgtcatgtttaatatatacattgaaaaggctgcggatatc
tatggaattcccaaaacacgtcagatctatgagaaagctattgatgtcctgaatgaggaa
aacactagggagatgtctctgcgattcgctgacatggaaacaaagctcggagaggtggat
cgtgcgagggcgatttatagccactgcagtcaaatttgtgatccgcgagtaacttccaat
ttttggcaggtgtggaaggacttcgaggttagacatggtaatgaagacacgatgagggag
atgttgaggataaaacgtagtgtacaagctatgtataatacgcagattaatatgatgtcc
gctcagatgttgaatacagcaacgtcggttcaaagtcatgagatcccggatgccatgaag
ttgttggatagcaaagttgctgcaacggggcagactggggctatgctacctaaggacaca
atttcatttgtccgtggagtaacggaaggaggcaacaaaacgagtcaagttactaatcca
gatgagattgatattgatatagatgaggatgatggagatagtgaagatgaggcacaggtt
gaggaggaggttccagtcgagaaacagcttattccttcgcaagtatttggaagcttgaaa
atgaatgtggatggcaatgatgattaa
DBGET
integrated database retrieval system
