Diachasma alloeum: 107044839
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Entry
107044839 CDS
T07663
Name
(RefSeq) exosome complex exonuclease RRP44 isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
dam
Diachasma alloeum
Pathway
dam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107044839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dam03019
]
107044839
Messenger RNA biogenesis [BR:
dam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107044839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
107044839
NCBI-ProteinID:
XP_015122411
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MLTTKTFFRKTKSGNIFKISRDHYLRDDIWCGSEACEVCKAKSSGKLLDENSPGAKSTLI
QGPYYLLLDTNIVLDQIHILEEQVLCNVVILQTVLEEVKHRSSNVYKSLADIITNPNRKF
YVFVNEHRRETYVERVKGETANDRNDRAIREATKWYNNHLFHQDTSKGIKTILLTDDNDN
KKKALKEGILALTMEEYVASLENGITEGVSLLDKLNKRNYILEGGRGGGEALFPCHLAPA
EIHAGISSGKLLQGSFFASRENFLEGSVNVDGMDKFVLVQGRVGLNRAVDGDIVALELLP
KDEWTVPSDIVLQDEDEEDPGDVLEEEKEIVQKPTKEVERTPTGKIVGIIRRKWRQYCGI
LQPNAIKENVRHLFVPAERKIPKVRIETRQAENLYKQRIIVAIDSWPRTSRYPLGHFVRA
LGNVGDKETENEVLLLEHDVPHSRFSDEVLSFLPKLPWVITESDVAQREDLRDIDVCSVD
PPGCTDIDDALHCRYLLNGNIEVGVHIADVSHFIRPGTALDKEAASRATTVYLVDKRIDM
VPELLSSNLCSLRGNEERLAFSCIWEMDHDANIINTRFCKSIIRSRAAMTYEEAQLKIDD
PNQNDVIAKSLRGLNTLAKKLKKRRLENGALVLASPEIRFQVDSETHDPIDVEAKKMRET
NSMVEEFMLLANISVAKKILDEFPECAMLRRHPEPPQSNFEPLVKAGKHQGFEINTLSGK
ELAKSLESAHKEDNPYFNTMLKILATRCMMQAVYFISGMHQPAEFFHYGLACPIYTHFTS
PIRRYADIIVHRLLAVCVGADATYPELLDKKKSHALCHNLNYRNRMAQYAGRASVALNTH
LFFREKVETQAGYILFVRKNALQILIPKYGLEGILYLNKKGQVSTVNFVYNDEEHTQTCG
DVVLKSFDPVEVQLSLDRSNVQHEKLVFKLVKPEIPGFSVTSTKPELAPASDVEMPEVSK
RKITEPDDAERPGPIKKKGRKKKKNRN
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaacaaaaacgttctttagaaagactaaaagtggaaacatcttcaagatctcg
agagaccattacctcagggatgatatctggtgtggttcagaggcctgtgaggtctgcaaa
gccaagtcctcaggaaaacttcttgatgagaatagcccaggggccaaaagtactttaatc
caaggtccatactaccttctcctggacacaaacattgtcctggaccagatccacatcctc
gaggagcaagtgctgtgcaacgtggtgattctccagacagtcctggaggaggtgaagcac
cgaagctcaaacgtttacaaatcgctcgccgacataatcaccaatccaaatcggaaattt
tacgtttttgtcaatgagcatcgaagggagacttatgtggaacgagtcaaaggggagact
gctaatgatagaaacgacagagcgatcagggaggccaccaagtggtacaacaatcacttg
ttccaccaggacacttccaaggggatcaagacgattttgttaacagatgacaatgataat
aagaagaaagccctgaaggaggggattttagctctaacgatggaggagtacgtggcatcg
ctggagaatggcatcactgaaggagtgagtctactcgacaaattgaataaacgtaattat
attctcgaggggggcagagggggaggggaggctctgtttccctgtcatctggctcccgct
gagatccacgcaggcatcagcagcggaaagctcctccagggctcattctttgcttcgagg
gagaatttcctggagggaagtgtgaacgtagatgggatggataagtttgttctggttcaa
gggagagttggattaaatagagcagttgatggggacattgttgctctggagttgctacca
aaagacgagtggactgtacctagtgatatagtactccaggatgaggatgaagaggaccct
ggagatgtgctggaggaggagaaggaaattgtacaaaagccaacgaaggaagttgaacgc
acaccaactggcaagatagttggcatcattcgaagaaaatggcgacagtactgtggtata
ttgcagccaaatgcaatcaaggagaatgttagacatctctttgttcctgctgagaggaag
atcccaaaggtgagaattgagacgagacaggcggagaatctttacaagcagaggatcatc
gttgctatagactcatggccgaggacttcgaggtacccactggggcattttgtcagggct
cttggcaacgttggcgataaagagaccgagaatgaggtgcttctcctggagcacgatgta
ccacactctagattctcggatgaggttctcagttttcttcctaaactaccgtgggtcatc
acagagtcggatgttgctcaaagggaggatttacgtgacattgatgtgtgctcggttgat
cccccgggatgcacagacattgacgatgctctccactgcagatatttactaaatggtaat
attgaagttggtgtgcatatagcagatgtatctcactttattcgacctggtactgcattg
gacaaagaagccgcttccagagcaactactgtttatcttgttgataagagaattgacatg
gtaccagaattgctcagttcaaacttatgctctctccgtggcaatgaagagagattagca
ttttcctgtatctgggagatggaccacgacgccaacatcatcaatactcgtttttgtaaa
tcaataattcgttctcgcgctgcaatgacgtacgaagaggctcaattgaaaatcgatgat
cccaaccagaatgacgtaatagccaagtctctgaggggtcttaatactctagcaaagaag
ttgaagaaaagacgacttgaaaacggggcacttgtattagcgtctcccgagatacgtttc
caagtggatagtgagacacacgatccgattgatgttgaggcgaagaaaatgagagaaaca
aattccatggttgaggaatttatgttgctggcgaatatctcagtggcaaagaagattttg
gacgaatttccggagtgtgcaatgcttcgaagacatccagagcctccacaatccaacttt
gagcccttggtgaaggctggaaagcaccagggcttcgagataaacactttatctggaaag
gaactggcaaaatcactcgagtcagctcacaaagaggacaatccttacttcaatacaatg
ctaaagattctggcaactcgatgcatgatgcaggcagtttatttcatcagtggaatgcac
caaccagctgaattcttccactatggtttggcctgtccaatctacacccacttcacctct
cccatcaggagatacgccgacataattgttcacagactcctcgctgtttgcgtgggtgct
gacgccacatatccagagctcctcgataagaagaagagccatgcactttgtcataatttg
aattacagaaatagaatggcacagtacgctggaagagcttctgttgctcttaatacccac
ctgtttttcagggaaaaggtggagactcaggctggctatatcctgtttgtgcgaaagaat
gcactgcagatactcattcctaagtatggcttggagggaatactctatttgaataagaaa
ggacaagtttcaacagttaattttgtgtataatgatgaggagcacactcaaacttgtggg
gatgttgtgttgaaaagttttgatcctgtggaggtgcagctgagtcttgatagatctaat
gtgcaacatgaaaaacttgtcttcaaattggtaaaacctgagattccaggtttcagtgtt
acttcaacaaaacctgagctagcaccagcctctgatgtcgaaatgccagaggtatcaaag
cgcaaaattaccgagcctgatgacgcagaaaggccaggaccaatcaagaagaaaggacga
aaaaagaaaaagaacagaaattga
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