Diachasma alloeum: 107047864
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Entry
107047864 CDS
T07663
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dam
Diachasma alloeum
Pathway
dam03013
Nucleocytoplasmic transport
dam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107047864
03015 mRNA surveillance pathway
107047864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dam03019
]
107047864
Enzymes [BR:
dam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107047864
5.6.2.5 RNA 5'-3' helicase
107047864
Messenger RNA biogenesis [BR:
dam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107047864
mRNA cycle factors
Common to processing body (P body) and stress granule
107047864
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
NPHP3_N
ATPase
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
107047864
NCBI-ProteinID:
XP_015126226
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDHGQSQQSQ
PVQINGTNGSSALDLKISGAAQNLAELQFEEEEEEAFYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECTCNFVVDFIWKSTSFDRMQLALRKFAVDDSS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSADEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLVKID
FPWPVPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLINSANPGSHFMSTSMYDAREALIPGSVYDRSGGQMNGNQAHNPYYQRNVPLDMFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRNPGGMK
GKGPRMGKLSQNDQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVGD
FQSQMDGLLSQDSTYQGDRSGFYQGQSQPGGQFSQPY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggacccagcagccagaccctcacgttcttggacaccgaggag
gctgatctcattggtgctgacacccagggaagtgaattcgacttcactgattttacgttg
ccatcgccaagtcagacacaggcgtcacagcacgatcatggacagagtcagcagagtcaa
ccggtgcagatcaatggaacgaacggaagttcagccctcgatctcaagatatccggcgca
gctcaaaatctagctgagctgcagtttgaagaggaggaggaggaagccttctacaatcgt
gatttgccagagcatgcatgcaagtactgcggcattcacgaggcatcgtgtgtcgttatg
tgcaacgtctgcagaaaatggttttgcaacggtaggggaaacacctcaggctcgcacatc
atcaaccatttggtgagagccaagcacaaggaagtcactctgcacagagatggacctttg
ggtgaaacagtactggagtgctactcctgcgctgtcaggaacgtcttcgtccttggattt
atccctgccaaggctgattcggtcgttgttctgctatgtagacagccctgcgctgctcaa
agttccttgaaggacatgaattgggatcaggagcaatggaagcccctcatcgaggaccga
agtttcctcgcctggctggtgaaaatcccctccgagcaagaacaactccgagcccgtcag
atatcagcccagcagataaacaagctcgaggagctctggcgtgacaacgtcgacgcgacc
ttccaagacctcgaaaagccaggggtagacgaagagccccaacaagtgttgctgcgctac
gaagacggctaccagtaccagaacatctttggccccttagtgaagctcgaggcggactac
gacaagcgtctcaaggagtcccagacccaggagaacatcgaggttcgttgggacgtcggt
ctcaacaagaagacaatcgcctacttcatgctggcgaagaccgatggagacatgaagctg
atgcacggtgacgagcttcgactgcgctatctgggtgaacttcacaagccctggtctggt
ataggccacgtgataaagattccagacaactacggtgaggaagttggcattgaattgaag
aataattcaggagctccgacagagtgcacctgcaatttcgtggtggacttcatctggaag
agcacgagcttcgacagaatgcaactggcactccgaaaatttgctgtggatgattcgtca
gtctcggcgtacatctaccaccgtctgctggggcacgaagtagaagaggttctcttccgt
tgtcacctcccgaagcacttcagtgccccgaacctcccggacctcaatcgttcccaagtg
tacgctgtgaagcacgcagtgcaacgccccttgtccctgatccagggtcccccaggcaca
ggtaaaaccgtcacgagtgcaacgattgtctaccaactggtgaagcagaacggaggtcca
gtcctggtgtgtgccccatcgaacacagcagtggatcagctcactgagaaaatccacaag
tcaaacctcaaagtggtacgcctctgcgccaagtcccgagaggccatcgactccccagtg
agcttcctagccctccacaaccagatcaagaacatggagaccaacactgaactccagaag
ctccagcagctgaaggacgagactggagagctctcctcagcagatgagaaacgttacaga
ttactgaagaaagcagctgagaaggagctgttggaggctgctgacgtgatctgctgcacg
tgtgtgggagctggtgacccacgactccatcgtctcaagttccactcgatcctgattgac
gagagtatgcaggcaaccgagcccgagtgcatggtgccagtggtcctgggggctaaacag
ttgattctagttggagatcattgtcagctggggcctgtggtcatgtgtaaaaaagcagcc
agggctggcctatcccaatccctcttcgaacgtctcgttgtcctgggtataagacccttc
agactcgaagtccagtacagaatgcacccagatttatccagattcccctcgaatttcttc
tacgaagggtcactgcagaacggtgtctgcgctgacgagagaaaactcgtcaagattgac
ttcccctggccagtcccagacaagcccatgttcttctacgtgactcagggacaggaggaa
atagctggaagtggtacatcctacctgaacagaactgaggcatcgaatgtcgagaagatc
accacgagattcctccggtgtggagttaagccagagcagatcggtgtcatcactccttac
gagggccaacgagcctatctcgtgcagtacatgcagtaccaaggctccctgcactcgaaa
ctctatcaggaaatagaagtcgctagtgtcgacgccttccagggacgtgagaaggacata
atcatcatgtcgtgtgtcagatccaacgagcaccaggggattggattcttgaacgacccc
aggagattgaatgtagctctgactcgagccaagtacggtatcatcatcgtggggaatccc
aaggtcctctctaagcagccactgtggaatcatcttctgagtttctacaaggagcagaag
gttctcgtcgagggacccctgaataacctgaaagaatccatgattcagtttgccaaaccc
aagaagctcataaactcagcaaatccaggctctcacttcatgtccacctctatgtacgac
gccagagaggcactgataccaggatcagtttacgacaggtctggcggccagatgaatggc
aatcaggcccacaatccctactaccagaggaatgttcccctggatatgttcagtagaact
cacgacaccatcagctacatcagccctgaacgagcccaggctgccatgaataatgtgcca
gtgcctgtggggatgtttatgaatatggcacatgtgccacccaggttttacaatcagcat
cagcaggccctgcaggcacgtcagaaccagagaaatcgacgtaatcctgggggaatgaag
ggcaagggtccgagaatgggtaaattgagtcagaatgatcagaatacacagccctacagt
cagccagggttgccactgactcaggggaccactcagggcatgtctcaacctggatttagc
ctgtctcaacctggtctcagtcaggctgaattgtcgcaggattcgtttgctgttggggac
tttcagtcgcagatggatggactcctctcccaggactctacttatcaaggggacagaagt
ggcttctatcagggacagtcacagccaggcgggcagttctcccagccgtactga
DBGET
integrated database retrieval system
