Diachasma alloeum: 107047918
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Entry
107047918 CDS
T07663
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
dam
Diachasma alloeum
Pathway
dam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107047918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dam03021
]
107047918
03019 Messenger RNA biogenesis [BR:
dam03019
]
107047918
Transcription machinery [BR:
dam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107047918
Messenger RNA biogenesis [BR:
dam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107047918
U7-dependent histone pre-mRNA processing factors
107047918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
107047918
NCBI-ProteinID:
XP_015126326
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MDPRLNKKIEPERGSSDMVVDWLNEASMTSNDTLKITNLSKLQEILIKKDPDLLDCYLEE
VLQFSLDKNSEVRKTVCGFIEEAGDKSPEIIPRMLLTLSRLVSDDAPVVTKRALRTCGKI
LRAVLKWVSSAAIVTPEMEAAWGHLSDLKIQIISMIDSDNDGIRTQAVKLLEGVVLLQTY
PDPDTPRKPDDFSLEDIPLTLKIARRRKLEEEANRVMDLLIKFHGSPHVSSLNLMTCMGS
LALIAKTRPQFMSNVITALQRLQNDLPPTLSDSQVTSVQKHLKLTLLNLMKHPASIEFAP
TIAKQLTQLGAKEQEILKVYPKAEDIRRMKKRQQESSISNASKRLKLDPIIPPPEEPEPP
PAPVPPVKPPELIELSESFIAERLSVEIAAELVMDSMAWVPDTMTSIFQREYVPNATTDV
SLQRQTISKLLAVQIKQAKAKKTNKNLKEEDIVMEDLIKNPTITVAEAKRERKREKDREK
EKEAKATLEAEKNLAKARNRVKVLKLNDVTKPLAKETKEKMLLMAVNRILKAEKSAVFGG
VAGVRSKILTTLAATFNPYIKEAVLRYITEEMRTRLDLALGWLYEEYALLQGFQRRTILG
TKPHEAPHQAYNFLLCTLISAIDGIQGKDRDSLLARLYLEAPLITEDAVEALKSVSSDEK
WDLTPLTLLKDLVIMRPTKGLTFLNVLLCHTGHEKKIIRDMAISLVVELYGRPELTKFIE
EYTVLYLGFLRLQNPPEIVFGKDRGREQVEEHWSESTTRACLELYLAVLGKHQDLIHELA
KVYSSMGADVKRIVLRLVEGPVRSLGMASPQLLKLVEMCPKGAETLVTRIIHILTEKAPP
SAELVAKVRDLYQTRVSDVRFLIPVLNGLSKKEVMAALPKLIKLNPIVVKEVFNRLLGTH
NNDSGIPHTSPVTPAELLIALHTIDPSRAELKTVIKATSLCFAEKQVYTQETLAVVMQHL
MELNPLPTLLMRTVIQSLSLYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQ
SFAVILQLPPQQLGEALNMAPGLKGPLRAHVEAFAENQKAHVPQSIMDVIQGKQTMEMHD
DFDIAPPGDYPPEQKIESMEVDLSEPAPPGLD
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggatccccgcctgaacaagaagatcgagccggagagaggctcaagcgacatggtcgtg
gactggttgaacgaggcctcgatgacatccaacgacaccctaaaaataaccaacctgtct
aaactccaggagatcctcataaagaaggaccccgacctgttggattgctacctggaggag
gtgctccagttctcccttgacaagaactccgaagtgcgaaagacagtctgcggcttcatc
gaggaagctggtgacaaaagcccggagataattccccgaatgctgctgaccctgtcgagg
ctagtctcagacgatgccccagtggtgacaaaacgtgccctgcgaacctgcggtaagatc
ctgcgagcagtcttgaagtgggtctcgagtgctgctatcgtcaccccggagatggaggca
gcctggggccacttgagtgacctgaagatccagataatcagcatgatagacagtgacaac
gacggaatccgaacccaggcagttaaactcctggagggagtggttctcctgcagacgtac
cccgacccagacacgcccagaaagccagacgacttctccctggaggacatccccctgacc
ctgaagatagcacgccgaagaaaactggaggaggaggcgaaccgcgtgatggacctgctg
ataaaattccacggttccccccacgtcagcagtttgaacctgatgacgtgcatgggaagt
ctcgcgctgattgccaagacacgtccccaattcatgtccaacgtcatcacagccctccag
cgcctccagaacgacctgcccccgacgttatcagactcgcaggtgacgagtgtccagaag
cacttgaagttaaccctgttgaacctgatgaagcacccagcgagcatcgagtttgccccc
acaatagccaaacaactgacccaactgggagccaaagagcaggagatcctgaaggtctac
cccaaagctgaggacattcgaaggatgaagaaacgccagcaggagtcgtccatcagcaat
gcctcgaaacgcctaaaactagatcccataattcctccccctgaggaaccagagccccca
ccagcgccagtccctcccgtgaagccccccgagctgatagaactatcagaatccttcatt
gctgagagactgagcgttgagatagccgcagaactggtgatggacagcatggcatgggtg
ccagacaccatgacctcgatattccagcgtgaatacgtacccaatgcaacgacagacgtg
agcctccagcgtcaaacaatttccaaactcctggctgttcagataaaacaagctaaagct
aaaaagactaataaaaatctcaaggaagaggacattgttatggaggatttgatcaagaat
ccaacgataacagtggcagaggccaaacgcgagagaaaacgagagaaagacagggagaag
gagaaggaagccaaagccaccctagaagctgagaagaatctcgccaaagctaggaacaga
gtgaaggtcttgaagttgaatgatgtgacaaagcccctggccaaagagaccaaagagaag
atgctgctgatggcagtcaacaggattctgaaagccgagaagagtgcagtgttcggtgga
gttgctggagtcagatcgaaaatcctcacgactcttgctgccaccttcaatccttacatc
aaagaggctgttctgcgttacataactgaggaaatgagaacacgattggacttggcactg
ggttggctttacgaagagtacgctctgctgcagggcttccagaggaggacaattctgggg
acaaaaccccatgaggcaccccatcaagcctacaacttcctactgtgcaccctcatctct
gcgatcgatggaattcaggggaaggatcgagactctctgctagctcgattgtacctggag
gctcctctgataacggaggatgccgttgaggccttgaagagtgtctcttcagatgaaaaa
tgggatctcactcctctcactcttctcaaggatctcgtcatcatgagacccaccaaggga
ctgaccttcttgaatgttctcctgtgtcacactggacatgagaagaaaatcatcagggat
atggccatcagtctggttgtggagctgtatggcaggcctgaattaacgaaattcattgag
gagtacacggttctttatctggggttcttgagattgcagaatccaccggagattgtcttt
ggaaaggacaggggaagggagcaggtggaggagcactggtcggagtcaactaccagagct
tgtttagaactttatcttgctgttctgggtaaacatcaggatctgatacacgagttggcg
aaggtttactcgtcgatgggggctgatgtgaagaggatagtcctgaggctggtcgagggt
ccagtgagatccctagggatggccagtcctcagttactgaagctcgtggagatgtgccct
aagggggctgagacacttgtcaccaggattatccatattttaactgaaaaagcaccaccg
agtgctgagctcgttgctaaagtcagggatctgtatcagacacgagtgtctgatgtgaga
ttcctcattccagtgctaaatggcctctcgaagaaggaagtaatggcagcactaccgaaa
ctcattaaactcaatcccattgttgtgaaggaagtgttcaatcgacttcttgggactcac
aacaatgacagtggcattcctcatacgtcaccagtgactccagctgagttgctcatcgct
cttcacacaattgatcctagtagagctgagctgaagactgttatcaaagctacgtcgttg
tgcttcgctgagaaacaagtttacactcaggaaacgttggctgtggtgatgcagcatctt
atggagctcaatccactccctacgctgttgatgagaacagtcatacagagtttgtcgttg
tatccgagactcagtggatttgtcatgaatattttgcagagattaattcttaagcaagtt
tggaaacagccgaaggtgtgggagggctttgttaaatgttgtgaacgcactcagccacag
agttttgctgtgatactgcagttaccaccgcaacaactcggggaggcgctcaatatggca
ccggggttgaagggaccactgcgggcacatgtggaggcattcgcggagaatcaaaaggca
catgttccacaatcgataatggacgtaatccagggaaaacaaacaatggaaatgcacgac
gattttgatattgctccaccgggagactatccaccagaacaaaaaatagaaagcatggaa
gttgatttatcagaaccagcccccccaggcttagattaa
DBGET
integrated database retrieval system
