Drosophila ananassae: 6497735
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Entry
6497735 CDS
T01059
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dan
Drosophila ananassae
Pathway
dan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6497735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dan03019
]
6497735
03041 Spliceosome [BR:
dan03041
]
6497735
03009 Ribosome biogenesis [BR:
dan03009
]
6497735
03016 Transfer RNA biogenesis [BR:
dan03016
]
6497735
Enzymes [BR:
dan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6497735
Messenger RNA biogenesis [BR:
dan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
6497735
Spliceosome [BR:
dan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
6497735
Complex C
U4/U6.U5 tri-SnRNP related factors
6497735
Ribosome biogenesis [BR:
dan03009
]
Eukaryotic type
Pre-60S particles
Helicases
6497735
Transfer RNA biogenesis [BR:
dan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
6497735
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
6497735
NCBI-ProteinID:
XP_001961458
UniProt:
B3ML21
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MDIDELFDCFNEAPPENLEGPPAFRAEEKGGENKAGVKRHAKSDTEADQKEEPSDDEEKV
NKRAKQDPKSSDEEQEDDKKDEDANDEVDPEDTADLEALRTRIVTHLLESPESCTHEVAA
HPDHEYIPLKPFTGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIA
KSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLIMTTEILRNML
YRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWV
CHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGHFKEDNFSTAMAVLANAGEA
AKGDQKSRKGGIKGANAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFN
TADEKKLVDEVFNNAMDVLSAEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFG
EGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDK
GIVILMIDEKVSPAVGRGIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQF
QNQAALPGLHEKVEQKTAELNKIVIKDEHNIASYHHIRSQLDHYGKQFRQWITRPQYLLP
FLQPGRLIKVSAGSQEYDWGIVLNFKKQDQSRKNPLKSEMSVTIDVLLHVSDAAAKSGDT
EPCGPNERGCMEVVPVAHTLVTQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPLGPP
VLNPIDDMNIKDREFREIVSAIAQFEQRLDEHPLHKSTELERIYRRYQEKVALQSELTEL
KNELKAARSLLQMEELKYRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMIFNG
VFNELTAPQALALLSCFVCDEKSTESPKSATELSGPLRSMQDLARRIAKVSSECKLTIDA
DSYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQASKTIG
NTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggacatagacgagctctttgactgcttcaacgaagcgcctcccgagaacctggagggg
ccgccagccttcagggcggaggagaaaggcggtgagaacaaagccggggtgaagcggcat
gccaaatccgacactgaggcggatcagaaagaggaaccgtccgacgatgaggagaaggtg
aacaagcgggccaaacaggatcccaagtccagcgacgaggagcaggaggatgataaaaaa
gacgaagacgcaaatgacgaggtcgatcccgaggataccgccgacttggaggccttgcgt
acgcggattgtgactcatttgttggagtcgccggagtcttgcacccacgaggtggctgcc
catccagaccacgagtacataccgctgaaaccatttaccggggtgccggccaaggagtac
cccttcgtgctggatcccttccagcgccaggccatcctgtgtatcgacaacagccagagt
gtcttggtttccgctcacacatctgcgggaaagaccgtggtggcagagtacgccatcgcc
aagtcgctggcagccaagcagcgcgttatatacaccactccaattaaggcgctctccaac
cagaagttccgcgagtttaccgacgagttcaaggacgtcggcctggtgactggcgatgtg
actattaatccttccgcctcctgtctgatcatgaccactgagatcttgcggaacatgctc
taccgcggcagcgaaattatgcgcgaggtgggctgggtaatctttgacgagatccattac
atgcgcgacaaggagcgcggagtagtctgggaggagacgcttattcttctgccggacaac
gtgcgctacgtctttctctcggccaccattcccaacgcgcgacagtttgccgagtgggtc
tgccacctgcataagcagccctgccacgtggtgtacaccgactaccgacccactccgttg
cagcactacatcttcccggcgggtggcgacggcatccacctaatcgtcgacgaaaagggg
cactttaaggaagacaactttagcacagccatggccgtgctggccaatgcaggtgaggct
gccaagggcgaccaaaagtcccgaaagggaggcattaagggcgcgaatgcgggacagaca
aacatcttcaagatagtcaagatgattatggagcgcaacttcgccccggtcatcatattc
tcgttcagcaaaaaggactgcgaaatatatgccatgcagatggccaagctggacttcaac
accgccgatgagaagaaactggtggacgaggtcttcaacaacgcaatggatgtcctctcg
gcggaggatcggcgcttgccccaggtggagaacgtgctgccgctgctccggcgcggcatt
ggcatccatcacggcggcttgctgcccattctcaaggaaactattgagattctgttcggc
gagggtctgatcaaagcgctgtttgccactgaaacctttgccatgggtctgaacatgcct
gccaggacagtcctattcacggcaccgcgaaaattcgatggcaaggactttcgctggatc
agctccggcgagtacatccagatggccggccgagcggggcggcgaggactcgacgacaag
ggcattgtcatcctaatgatcgacgaaaaggtgtcgccggcagtgggccgcggcattgtc
cagggcaaagccgatcccatcaactctgccttccacctgacctacaacatggtgctgaac
ctgctgcgtgtcgaggagatcaatccggagtatatgctggaacgtagtttctatcagttc
cagaaccaggccgccctgccaggcctgcatgaaaaggtagagcagaagacggccgaactg
aataagatagtcatcaaagacgagcacaacattgcctcgtaccaccacatccgctcgcag
ttggatcactacggcaaacagtttcgccagtggattacgcggccgcaatatctcctgccc
tttctacagcctggccgattgatcaaggtgtcggccggctcccaggagtacgactggggc
atcgtgctgaacttcaagaagcaggaccagagccgcaagaatccgctcaagagcgagatg
agtgtcaccatcgacgtgctgctgcatgtgagcgacgcggctgccaaatccggcgacacc
gagccctgcggccccaacgagcgcggctgcatggaggtggtgcccgtggcccataccctc
gttacgcagatcagctcaatccgcgtttacttccccaacgacctgcgcagtgcggacaac
aggcgggccgtactgaagaccatccaagaagccaagaaacggtttccgctgggcccgccc
gtcctgaatcccatcgacgacatgaacatcaaggatcgagagttccgggagatcgttagc
gccattgctcagttcgagcaacgcctggatgagcacccgctgcataaatcgacggagctc
gagcgtatctatcgacggtaccaggagaaggtggcgctccagtcggagctgactgagctg
aagaacgagctgaaggccgcgcgcagcctgctgcagatggaggaactgaagtaccgaaaa
cgcgtgctccgtcgaatgggctactgcaagcccggagacgtcatcgagttcaaaggccgt
gtggcctgcgagctgagctcggcggacgagttgctgatgaccgagatgatcttcaacgga
gtgttcaacgagctgaccgctccgcaggcgttggccctgttgtcttgctttgtgtgcgac
gaaaagtccacggagtcgccgaaaagcgccaccgagctgtccggtcctctacgttccatg
caggatctcgctcgtcggatcgccaaagtatcctccgagtgcaagctgaccatagatgcc
gatagctacgtagataagttcaagccattccttatggatgtggtgctggcttggtgcaag
ggctccagtttcctggcggtgtgcaagatgaccgacatcttcgagggctccattattcgt
tgcatgcggcgcctggaggagctgctgcggcaaatgtgccaggcctcgaagaccatcggc
aacacggacctggaaaacaagttctcggagggcattcgacttctgaaacgcgacattgtg
tttgccgcttccttgtatctttaa
DBGET
integrated database retrieval system
