Drosophila ananassae: 6501508
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Entry
6501508 CDS
T01059
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dan
Drosophila ananassae
Pathway
dan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6501508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dan03019
]
6501508
Enzymes [BR:
dan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6501508
Messenger RNA biogenesis [BR:
dan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
6501508
mRNA degradation factors
3'-5' decay
Ski complex
6501508
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
ATPase_2
SH3_HelY
Motif
Other DBs
NCBI-GeneID:
6501508
NCBI-ProteinID:
XP_001955390
UniProt:
B3LY47
LinkDB
All DBs
Position
Unknown
AA seq
1195 aa
AA seq
DB search
MSQIKGDDNLEKLRNYILRPDLSLHNPLPDIVPRKSDAMRLLNVPRCPGSTKLVPRRDQN
GQIIEFLEIEVEDVGANANNSMSMQREDATRGSHSNFPFWPGGFDEQRQQIAALEVENFH
FGDKLLTLPPGFSEGYDFSKSHPLPAAPKVLDEPSPSNVDLLKNLEKDLDVQEWMQLTKE
GGASATPHYPSDGNLPFPTEEFKDVDDQIMKTDLKPVLNISTTTKTFKSDWAEMVDISQP
INNFKEQIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIALSKRD
LTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLYCGSD
ITRDLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGSTKK
RKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGRYLQGNYEKAVERKKEMQGKA
KGGSGGGGFNGPKNAKLDQYTWIGLIDFLRRNNKMPVVAFTLSRNRCDTNVAALQSVDLN
TEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHHSGILPILKEIVEMLFQ
NGLVKLLFATETFAMGVNMPARTVVFDSHRKFDGLEVRNLKPGEYIQMAGRAGRRGHDET
GTVILLCKTNVPPSMELRPMILGLPEKLQSQFILRYAVILTCLRIESIKVEEIMQFSFKE
FSQKLQLPTQQKQLRVAEAKFAMLPTLGEHLQPLILFYDKAVEYWKEKHRSMKFIVTQAK
IQKELKVGRVIVITQGKHYNKLAVLLLIKSVPGKDTVYKVLVLDHQFKTLESEGLQRGEL
YYKILSLTPKYKYFQPEGIGGHAVIDVKALDIVSITKNTFKVDADVIIRNWEQRQLERFK
DTPPGGTVVKAVTDLYQLNESYMANPASVKFVNLGKEINVNADTELAMLHYVDHLYKQVE
DLLPHTNIAGFEQEFAKVYERRMLEIHIEELRFKNSAKNLTLYPDYCNKLQVLRALKYID
ESDEVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKTQGEPTIPE
PLKKYVESFEQINETILKEEQRFQAATETESRLNFGLLEVVYEWARNKPFAEIMKLTEVQ
EGIIVRCIQQLDETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaataaaaggcgacgataatctggagaagctccgcaattatattttgcggccg
gacctctccctccacaatccactgccagacattgtgccacgcaagtctgatgcgatgcgc
ctgttgaatgttccccggtgtcccggcagcactaagctggtgcctcgaagagatcagaat
gggcagatcatagagtttttggaaatcgaagtggaggacgtgggagccaatgccaacaat
tcaatgtccatgcagcgggaggatgccacccgtggatcccactccaattttcccttctgg
cccggcgggttcgatgaacaacgacagcaaattgctgctctcgaggtggagaacttccac
ttcggcgataaactactaacactgccgccagggttttcggagggctacgatttctccaaa
tcgcacccacttcctgcagcccccaaggttcttgacgaacccagtcccagcaatgtggac
ctgttgaagaacctggagaaggacctggacgtgcaggagtggatgcaactgacaaaagaa
ggtggtgcatctgccacaccacactacccaagcgacggaaacctaccatttcccaccgaa
gagttcaaagacgtggatgaccaaattatgaaaacggacttgaagccggttctcaacatc
tccaccaccacaaagaccttcaagagtgattgggccgagatggtggacattagccagccg
attaataacttcaaggaacagataccttgcccagccatggactttcccttcgagctggac
gtctttcagaagcaggctattctgaagctggagcagcgccagtatgtgttcgtggccgct
catacatcggccggaaaaactgtggtggcagagtatgctatcgccctgtcaaaacgggat
ctcacccggactatttacacgtcccccattaaggcgctgtcaaaccagaagtaccgggac
ttcaggaagacctttaaggatgtgggattgataactggtgacctacaaatcgaacccaca
gcctcatgtctgattatgaccacggagatattgcgttccatgctctattgtggaagtgac
atcaccagggacttggagtacgttattttcgatgaagtgcactacatcaacaatcctgaa
cgaggtcatgtgtgggaggaggtgattatacttctgccggaccacgtcaacattataatg
ttaagcgccacagtgccgaacaccatggagttggctgactgggtgggcagcacaaaaaaa
aggaaggtgtatgtgataagtaccctgaaaagacccgtgccgcttacccactttctctat
actggagccggagggaagagcagagatgatatatttcttttggttgatgcccaaggtaga
tatctgcagggcaattacgagaaggcagtggaacggaaaaaagagatgcagggaaaagca
aagggaggatcaggaggaggcggtttcaatggacctaaaaatgccaaacttgaccaatac
acgtggatcgggctgatcgatttcctccggcgcaacaacaaaatgcctgtggtggcgttt
acgctatcacggaatcgatgtgatacaaatgtggctgccttgcagtcggtggatctcaat
acagagaaggagaagggcgcggtgcaaaagtttttcctgcagtgcttggccaagctgaag
ccgccggatcgcaccattcctcaggttcttgttcttaaggatgcattagaaaggggcatt
ggcgttcaccacagtggcatcctgccaattttgaaggagattgtcgaaatgctcttccag
aacggtctggttaagcttctgtttgccaccgaaacctttgccatgggtgtcaacatgccg
gcccggaccgtggtctttgattcgcacagaaaatttgatggtctggaagtgaggaacctt
aagcccggagagtatattcaaatggcgggaagagcggggcgacgtggccacgatgagacc
ggaaccgtgatcctgctatgcaaaacaaatgtgccgccgtccatggagcttaggccgatg
atcctcggcctgccggagaagctacagtcccagttcattctgcggtatgcggtcatcctc
acctgcctgcgcatcgaaagcatcaaggtggaggagattatgcagttcagctttaaggaa
ttcagccagaagctgcagctcccgacgcagcagaagcaacttcgcgtcgccgaggccaag
ttcgcaatgctgcccactctcggcgagcatctgcagccactcattcttttctatgacaag
gccgtggagtactggaaggagaagcaccgcagcatgaaatttatagtcacccaagctaag
attcaaaaggagctaaaggtcggtcgggtgatagtcattacccagggcaagcactacaac
aaactggctgttcttctgcttatcaaatccgtacccggcaaggacaccgtttacaaagtt
ctggttcttgaccatcaattcaaaactctcgagagtgaaggcttgcagcggggcgagctc
tactacaaaatactctccctgacgcccaagtataagtacttccaaccagaggggattggt
ggccatgctgtcatagacgttaaggctttagacattgtgagcattacgaagaatacgttt
aaggtggacgcggatgtgatcatccgtaactgggagcaaagacaactggaacgatttaag
gatactccgccaggtggaactgtggttaaagctgtcaccgatttgtatcagctgaatgaa
agctatatggcgaatccggcgagcgtcaagttcgtcaatttgggcaaagaaatcaatgtg
aacgcggacaccgagttggcgatgctccactatgtggatcatctatacaagcaggtggag
gatctgctgccgcacaccaatattgccggcttcgaacaggagttcgccaaggtctatgag
cgtcgaatgctagagatccacattgaagagctgcgctttaagaattcggccaaaaaccta
acactctacccggactactgcaacaagttgcaagtgctgcgggctctcaaatatatcgac
gaatcggacgaggttaccttgaagggcaaggtggcctgcgaaatgggtcagaatgagctg
ttgattacggagctgatcttgtgtaatatgttcaacgatctcgaacccgcagagatagcc
gcacttctgtctggcttggtctttcaggccaagactcagggagaaccaacaattccggag
ccgttaaaaaaatacgtcgagtcctttgagcagattaatgagactatcctgaaagaggaa
cagcgtttccaagctgctaccgaaaccgagagtcgcctgaactttggcctgctggaggta
gtttacgagtgggccagaaataagccattcgcagagattatgaagctaactgaggtgcag
gaaggtattattgtgcgctgcatccagcagttggatgaaactctgcgagacgttaagact
gcagccattcgtatcggcaatcctggactgcagtcaaagatggaggaggcttcggcagcc
attaagcgcgatattgtgtttactgcgtccctgtacacggagctttag
DBGET
integrated database retrieval system
