Desulfobacca acetoxidans: Desac_0483
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Entry
Desac_0483 CDS
T01454
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dao
Desulfobacca acetoxidans
Pathway
dao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desac_0483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dao03019
]
Desac_0483
03009 Ribosome biogenesis [BR:
dao03009
]
Desac_0483
Enzymes [BR:
dao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Desac_0483
Messenger RNA biogenesis [BR:
dao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desac_0483
Ribosome biogenesis [BR:
dao03009
]
Prokaryotic type
rRNA processing factors
Desac_0483
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
SPP1_Dit
Motif
Other DBs
NCBI-ProteinID:
AEB08369
UniProt:
F2NF29
LinkDB
All DBs
Position
580445..581992
Genome browser
AA seq
515 aa
AA seq
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MLINASDPEEFRVAIVEDGKLEEFALEAASREQLKGNIYKGVISNIEPSLQAAFVHYGAE
RQGFLPISEIHPEYFQPEAPQRSRPKIQEVLKKGQELLVQVIKEEIASKGAYLTTYISLP
GRFLVLLPGQEQIGISRKIEEEARRQELKALIKEFNLTHGMGLIVRTASEAAKKRELQKD
YQYLNNIWQEIKKNAGQSPAPALIYKELDLVIRTIRDYYTADINEILIDDVETFTQIKNF
FKAFSPKHTNVLKLYKEKRPIFSKYQIEEQLERLYDNQVPLKSGGGVVINPTEALVAIDV
NSGRCISPKEVEETAFKTNLEAAQEIARQLRLRDLGGLIVIDFIDMKDRKHRKEVEKELK
AALKKEKARVTVGQISKFGLLELSRQRLRPAVQTSLYITCPHCQGRGLIKSVEASGLSLI
RKICHEAAKNDIQEVRALLPQEVTNYLLNKKRKELVSLEEKFQLRLFIASKEGLAWTESR
LEFIKRQIDQEKTKAALEGLIEERLKDQKGLFHAE
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcctccgatccggaagaattccgggtggccatcgttgaagatggcaag
ttagaggaatttgccctggaggcggccagtcgagaacagcttaaaggcaacatttacaaa
ggcgtcatttcgaatatcgaacccagtctccaggcagcttttgttcattatggcgccgag
cggcagggttttttaccgatctcagaaatacatccggaatattttcagcccgaagcccca
cagcgatcacggcccaagattcaagaagtcctgaaaaagggacaggaacttcttgtccag
gttatcaaagaagagatcgcctccaaaggcgcctatctcacgacctatatctccctgcca
ggacggtttctggtcctcctgcccggtcaggaacagatcggcatatcccgcaagatcgaa
gaagaggcccgacggcaggaactcaaagcacttatcaaagaattcaatctgacccatggc
atgggcctgattgtacgcacggccagcgaggctgccaagaagcgtgagttacaaaaagat
tatcaatacctgaacaatatctggcaggaaatcaaaaagaacgccgggcaatctccggca
cctgccttgatctacaaagagttagatcttgtcatccgcactattcgagattattacacc
gccgatatcaacgagatccttatcgatgacgtcgagacttttacccagataaagaatttt
ttcaaggccttttctccaaagcataccaatgtattgaaactctataaagaaaagcgcccc
atcttttccaagtatcagatcgaagagcaactcgagcgtctctacgacaaccaggtgccg
ttaaaatccggagggggcgtggttatcaatcccaccgaggccttagtagcgatagacgtc
aattccgggcgttgcatttcccccaaggaagtggaggagacggcttttaagaccaacctg
gaggcggctcaagagattgcccggcagttgcgcctgcgcgatctaggcggtcttatcgtc
atcgattttatcgatatgaaagaccgtaagcaccgcaaagaagtagaaaaagaactgaag
gcggcacttaaaaaagagaaggcccgagtaacagtcgggcagatttccaaattcgggctg
ctggaactctcccgccagcgattgcgtccggcagtgcagacaagcctgtatattacctgt
ccgcattgtcagggacgcggtctcatcaaatcggtggaagccagcggcttgagtctgatt
cgaaaaatctgccatgaagccgcgaaaaacgacattcaggaagttcgggccctcttgcct
caggaagtcaccaattacctgctcaataaaaaacgcaaggaattggtctccctcgaagaa
aaatttcagctgcgcctgtttattgcctccaaagagggattggcctggacggaaagccgc
ctggaatttatcaaacgccagatagaccaggagaaaaccaaagccgcactcgaggggctc
atcgaggaacgtttaaaagatcagaaaggattgtttcatgcggagtga
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