Desulfobacca acetoxidans: Desac_0741
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Entry
Desac_0741 CDS
T01454
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dao
Desulfobacca acetoxidans
Brite
KEGG Orthology (KO) [BR:
dao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dao03016
]
Desac_0741
Enzymes [BR:
dao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Desac_0741
Transfer RNA biogenesis [BR:
dao03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Desac_0741
Prokaryotic type
tRNA splicing ligases
Desac_0741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Asparaginase_C
Motif
Other DBs
NCBI-ProteinID:
AEB08620
UniProt:
F2NF65
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All DBs
Position
869721..871169
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AA seq
482 aa
AA seq
DB search
MSVGIKLRQLDAYRWEIPQEGKMRTRGLIFCAAEMIPALRQDQSLQQVANVATLPGIVGP
SLAMPDIHWGYGFPIGGVAAFDLATGVVSPGGVGYDINCGVRLLRTDLHRSEIAGLVQEL
VDTLFSNIPSGLGSRRRDFKLAPPTLKDVLRYGAAWAVKNGFGNADDLLHIEAGGCIKGA
DPELISGQALERGHDQLGTLGSGNHFTEIGYVQEIFDETLARALGVFLDQVTVIIHTGSR
GLGHQVCDDHIKKLLQASTKYGFDLPDRQLCCAPIQSPEGEEYLAAMAAAANFAFANRQI
ITHWVRETFQQVLGLGPKALGLELVYDVAHNIAKIETHTVNGRPQKLCVHRKGATRAFPA
HHPEVPALYQETGQPVLIPGDMGRYSYLLVGTQQAMEETFGSTCHGAGRILSRHQALKRA
RGRSIVKELAAQGIIIRGAGKGTVAEEIPEAYKDVEQVVEVVHGAGISRKVAKLHPLGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttggaattaagcttcgacagttagatgcctatcggtgggagattccccaggaa
ggcaagatgcgcacccgcggcctcatcttctgtgcagccgaaatgataccggccctgcgc
caggatcagagcctgcagcaggtggccaatgtggcgacactgcctggcattgtaggacct
tccctggccatgccggacatccactggggatatggctttcccatcgggggggtggcggcc
tttgatctagcgacaggcgtggtttcacccggcggggtcggctatgatatcaactgcggc
gtccggctgctgcgaaccgatctgcatcggtcggagatagccggcctggtccaggagctg
gttgacaccctatttagtaatatcccttccggtctgggctcccggcgccgggattttaaa
ctggcgccccccactctgaaagatgtcctgcgctacggagctgcctgggcagtaaaaaac
ggcttcggaaacgccgatgacctgttgcacatcgaagccggcggttgtattaaaggcgct
gacccggaactgatttcgggccaggccctggagcggggacatgatcagctcggcaccctg
ggctccggtaaccattttactgaaatcggctacgtgcaagagatatttgatgaaacattg
gctcgggcattgggtgtcttcttggatcaggtgacggtgatcatccataccggctcccgg
ggattgggtcatcaggtctgcgacgaccacattaagaagctgctgcaggcctccactaaa
tacggcttcgacctgcccgaccggcagttgtgctgcgctcccatccaatcgccggaaggg
gaggagtatcttgccgccatggccgcggcggccaatttcgcttttgccaatcgacagatc
atcacccactgggtacgggagacttttcagcaggttctcggcctgggtcccaaagcactg
ggactggaactggtgtacgatgtggctcataatatcgccaagattgagacccacacagtg
aatggcaggccgcagaaactctgcgtgcaccgcaaaggcgccacccgagcctttccggca
catcaccccgaggttccggcgctctatcaggagactggccaaccggtgctgattccgggt
gatatggggcgctactcctatctgttggtgggtacccagcaggccatggaggagaccttc
ggcagcacctgccacggcgccgggcggattctcagccgccatcaggccctcaagagggct
cggggccgctctatcgtcaaggaactggcagcacaaggaattatcatccgaggtgccggt
aagggcacggtggccgaagagatcccggaggcctataaagacgtggagcaggtcgtggaa
gtggtacacggcgctggcataagccgcaaggtggccaaattgcatcctttaggggtaata
aaaggataa
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