Desulfobacca acetoxidans: Desac_0970
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Entry
Desac_0970 CDS
T01454
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dao
Desulfobacca acetoxidans
Pathway
dao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desac_0970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dao03400
]
Desac_0970
Enzymes [BR:
dao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desac_0970
DNA repair and recombination proteins [BR:
dao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Desac_0970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_25
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEB08837
UniProt:
F2NC42
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All DBs
Position
1117611..1121117
Genome browser
AA seq
1168 aa
AA seq
DB search
MPDNTVRLYQLLMAVEPRQTPLELYGLSPAAASLTLVRLWRELHRPILLVTPSTGQQVSF
YGDLKFFLSGCQEVVSSDASTSPLYIFPEHENLPFVELTPDCKTASHRLAAAYALSARIN
MPIITATPAALLQPLPPRDKLSTIIEYLVVGEEIDRDRFLAHLQAGGYTRRPLVEERGDY
SVRGGVIDFFPPLSSYPVRAEFWGDTIDSLRHFNPATQRSLRHFEDAIVLPVSEVFLDSE
TQKAASRRLRSVKDPLILEYLQRREHFPQIERYLPYFYDKIEYLGDYLPENCLVGLWDPL
NISQELKRYLAIESQERPGLELSQDDWQKFEEKFQTLHFHTVPFSDHSIPTPKVFHFSVA
GNQELAASLAASATEPGRLIGPLANRLQQWRESGFQVILVCRSRSQAERLSLLLADRQVP
TDLTPSFQWDCVGALQLTWNGLSAGFQWLSEALIVLTEEEVLGASREPSKRKTTRPLQFL
TSLTDLKVGDPIVHLDHGVGLYRGLVKLAVGSEINDFLQLEYLGGDRLYLPVDRLHLVQK
YMGVDDKIPPLEKLGGKSWEKTKKRVRQAVEKIARELVELYAARRVLPGHHFSPPDPALR
EFEATFDFEETPDQLEAIQDVLEDMASDRVMDRLICGDVGYGKTEVALRAAFKAAMDGKQ
VAFLVPTTVLAEQHLETFKRRFRSYPLEIRALSRFRAFKEQKRILADLSAGKVDIIIGTH
RLLQKDVHFKELGLIIVDEEQRFGVSHKEKLKKFRQTVDVLTLSATPIPRTLQMAMTGIR
EMSIINTAPAERQSIKTYLVRPNDSIICEAVRRELERGGQVFFVHNRVHNLPSYVAYLKR
LVPKARIGMAHGQMPEKDLEHVMWQFWRREIDVLVCTAIIESGLDIPAANTIIINRAHAL
GLAQIYQLRGRVGRGREQAYAYLLVPEEEHLNPEAQKRLKALMEFTELGSGFKIALHDLQ
IRGAGNILGAAQSGHIAEVGYELYLQLLEEEINRLKGEPRDETPDPELHLPLAAYLPESY
IPDIDQRLMFYRRLSGRLTDGEIDGIAEELLDCYGPLMPEAVNLLEVVRAKGRLREIGIK
RLEMNNGLITITFADMPQIDLDRLIAQVLKQPRLYRLTPNNQLRVHQQDDGAPLDRLKNC
LKEIEFFVIGEEKKRIVDSRAVHKELSP
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcccgataatacggtacgattatatcaactgctgatggcggttgaaccacggcagacg
ccgctggagctttatggcctgtccccggcggccgcaagcctgacactggtccggctctgg
cgcgaacttcatcgcccgatcttgctggtaactccttcgaccggacaacaggtcagtttc
tatggtgacttgaagttctttctgtccggctgtcaggaggttgtttcctccgacgccagc
acctcgccgctctatatcttcccggaacatgaaaacttgccgtttgtcgaactgacgccg
gattgcaaaactgccagtcaccgtctagcagccgcttatgctctgtcagcccgaatcaat
atgccaatcatcaccgcaaccccggcggctttgttacagccccttcccccacgggacaag
ctatcgacaataatcgaatatctggtggtgggagaggagattgatcgtgaccgatttttg
gcccatcttcaggccggcggctataccaggcgtcccttagtggaggagagaggcgattac
agcgtgcgtggcggagtaatagatttctttccaccactgagctcgtatcctgtcagggcg
gagttttggggagataccatcgattctctgcggcatttcaaccctgccacgcagcgctct
ctgcgccatttcgaagatgccatcgtcttaccggtaagcgaggtcttcctcgattccgag
acccaaaaagccgccagccgccgcctgcggtcagttaaagaccctttgattctggaatac
ctccagcgccgggaacattttccccaaattgagcgatacctgccgtacttctatgataaa
atcgaatatctaggggactatctcccggaaaactgcctcgtagggctctgggacccgctt
aatatctcccaggagttaaaacggtatctggcaattgagagccaggagcggcccggactg
gaactatctcaggatgactggcaaaaatttgaggagaagtttcaaacgctccatttccac
accgtccctttcagtgatcattccattccgacgccaaaggtttttcatttttcagttgca
ggaaatcaggagctggcggcttccctggcagcttcggccacagagcccggacgtttaatc
ggaccgctggcaaaccggttgcagcaatggcgagagagcggttttcaggtgattctagtc
tgccgcagccgctctcaggcagaacggttgagcctgctgttagccgatcgtcaggttccg
actgatcttaccccaagttttcaatgggattgcgttggcgccctgcaattgacctggaac
ggactttcggccggatttcagtggctgtctgaggccctcatcgtcctcaccgaagaagag
gttctgggagcctcccgggagccatcgaaacgcaagaccactcgccccctgcagttctta
acctctctcaccgaccttaaagttggcgacccgatcgttcaccttgaccatggggtcggg
ttatatcgtggtctggtcaagttggcggtgggtagcgaaataaacgactttctccaactc
gaatatttgggcggcgaccggctctacctgccggtggaccgattgcatctggtccagaaa
tacatgggggtggatgataagattccccccctagaaaaattaggcggcaagtcatgggaa
aagaccaaaaaacgggttcgtcaggctgtagagaagatagccagggaactcgtggagctg
tatgccgcccggcgggtcctgccaggccatcacttttctccgcctgacccggccctgcgg
gaatttgaagccacctttgattttgaagaaacccccgaccaattagaggctatccaggat
gtcttggaagacatggccagcgaccgggtgatggaccggttgatctgtggtgacgtgggc
tatggcaagaccgaggtggctctgcgggctgcctttaaagctgctatggacggcaaacag
gtagcttttttagttcctaccacagtcctggcggaacagcacctggagacttttaaaagg
cggtttcgctcctatccactcgaaatcagagccctcagtcggtttcgagcgtttaaagaa
cagaaacggattttggccgacctgagcgctggcaaggttgacatcatcatcggtacacac
cggctgctacagaaagacgtccattttaaggaattgggtctgattattgtggatgaggag
cagcgttttggcgtcagtcataaagaaaaattaaagaaattccgccagacggttgatgtt
ctgactctcagcgccacccccatccccaggaccttgcagatggccatgaccggcatccgg
gagatgagcattatcaacactgccccggcagagcgccagtcgattaagacctatctggtt
cggccgaatgacagcattatctgcgaggctgttcggagagaacttgagcggggcggacag
gtgttcttcgtccataaccgggtgcacaatcttccttcttacgttgcctatctgaagcgg
ctggttccgaaagcccggataggcatggctcacgggcagatgccggaaaaagacctggaa
catgtcatgtggcagttttggcgtcgagagattgacgtcctggtctgtactgccattatt
gaatccggcctggatatcccggcggccaataccatcattatcaaccgggcccacgccctg
ggattggcccagatttaccagttgcgagggcgggttggcagagggagggaacaggcttat
gcctatttattggttcccgaggaggaacacctgaatcccgaggcccagaaaagattgaag
gcgctgatggaattcaccgaactcgggtccggctttaaaatcgcccttcatgatttgcag
atcaggggggcgggcaatattctgggcgctgcccagtccggccacatcgctgaagtcggc
tatgaactctacctgcaattgctggaggaggagattaaccgtctgaaaggcgaaccgagg
gatgagacccccgatccagaacttcacctccccctggcggcttacctgccggaatcctat
attccggacatcgaccagcgcctgatgttctatcggcgtttaagtggtcgcttaaccgat
ggagagatcgatggcattgctgaagaattactggactgctatggcccattgatgccggag
gcggtaaatctgctagaggtggttcgggctaaagggcgcttgcgagaaatcggcatcaag
cggttggagatgaataatgggctgattaccattacgtttgccgatatgccccagattgac
ctggatcggctcatcgcccaggttctgaaacagccccgactttaccgcctgacgccgaat
aaccaattgcgggtgcatcaacaagacgacggcgcccccctcgatcggctgaaaaactgc
ttgaaagaaattgaattttttgttattggggaagaaaaaaagagaatcgtagattctcgt
gcagttcacaaggaactatctccatga
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