Desulfobacca acetoxidans: Desac_1061
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Entry
Desac_1061 CDS
T01454
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dao
Desulfobacca acetoxidans
Pathway
dao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desac_1061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dao03019
]
Desac_1061
Enzymes [BR:
dao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desac_1061
Messenger RNA biogenesis [BR:
dao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desac_1061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Flavi_DEAD
UvrD-helicase
AAA_22
P-loop_SecA
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AEB08925
UniProt:
F2NH83
LinkDB
All DBs
Position
complement(1224142..1225389)
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AA seq
415 aa
AA seq
DB search
MEFSIFDFHHQVTAGVVAARFRTPTPIQAKAIPLIMQGHDVVGLAHTGTGKTAAFVLPIL
HRLMQGERRQVRALVIAPTRELAQQIHEAIGTLGSRTGLRSVTIYGGVGFNPQVDKLKRG
AEIVVACPGRLLDHMNQGTIDLSNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTERQTLL
FSATMPDDILHLAHEVLKAPVTVQVNNIGPAINVSHRLYPIKQHLKTALLLELLRHTNTE
SVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILVATDIAA
RGIDVTQISHVINYDMPDTIDAYTHRIGRTGRNTKTGDAFTFITSEDEDMVRRIENVLRT
RVRHCILDGFDYKKADALPDCKLARPLSQAQRRRERKKTEPSKGRGKDSQFFGHR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggaatttagcatattcgattttcaccaccaggtcacggccggcgttgtggcggcacga
tttaggacgcctacgccgatccaggccaaggcaatcccgctaatcatgcaagggcatgac
gttgtgggcctagcccataccggtaccgggaagaccgcggcctttgtgctgcctatcctg
catcgcttgatgcagggcgagcgtaggcaggtcagggctcttgttattgcccccacccgc
gaattggcccagcagattcacgaagccataggaaccctgggaagccggaccggactcagg
agcgttactatttatggcggagttggtttcaatcctcaggtggataagctgaagcgcggc
gccgagattgtcgttgcctgtccgggtcgcctgcttgaccacatgaatcagggcaccatc
gacctgtcgaatctggaagtgctcgtcctggatgagtcagaccggatgttcgatatggga
tttctgcctgatattagaaagatcatcaagcacgtgccgacagaacgccagacactgttg
ttttcggcaaccatgcctgatgatattcttcatctggcccacgaagtactaaaagcaccg
gttacggtgcaggtcaacaatattggaccggcaatcaatgtctcacacaggctttatccg
atcaagcagcacctcaaaaccgcgctccttctcgagctgttgcgccataccaacactgaa
tcggtattgatctttacgcgcaccaaacaccgggccaaacggttaggggaacaactgggg
aaggccggctatcgcgccacgtcactgcagggaaatctctcccaggggcggcgacaggcc
gtgatgaacggatttcgcaacggtacgttccagatactggtggctactgacattgccgca
cgcgggattgacgtaacccagatttcccatgttatcaattacgacatgccggatactatc
gatgcctatacgcatagaatcggacgtaccggccgaaatacgaaaaccggggatgccttc
actttcattacctctgaagatgaggatatggttcgccggatcgagaatgtcctccgcacc
agggttagacattgtatacttgacggttttgattataaaaaagctgatgcgctgcccgat
tgcaagttagcccgaccgttgtcccaagctcagcgccgcagagaacggaaaaaaactgaa
ccatccaaagggcgcggtaaagattcacagtttttcggacacagataa
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