Desulfobacca acetoxidans: Desac_1462
Help
Entry
Desac_1462 CDS
T01454
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dao
Desulfobacca acetoxidans
Pathway
dao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desac_1462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dao03021
]
Desac_1462
03400 DNA repair and recombination proteins [BR:
dao03400
]
Desac_1462
Enzymes [BR:
dao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desac_1462
Transcription machinery [BR:
dao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desac_1462
DNA repair and recombination proteins [BR:
dao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desac_1462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
EIIBC-GUT_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AEB09317
UniProt:
F2NJE5
LinkDB
All DBs
Position
complement(1663737..1668104)
Genome browser
AA seq
1455 aa
AA seq
DB search
MDKMREVNLEDINSIFAKPKDPLQFNAVRISLASPEMIRSWSYGEVKKPETINYRTFKPE
RDGLFCAKIFGPTKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERMGHIELACPVV
HIWFLKSLPSKIGNLLDLTLKDLEKILYFESYVVIDPKNTALRKGEILSEEKFRQAREEY
GDEFEAGMGAEAIRDMLSNLDLTPLSEQLREEMQKTSSEAKRKKISKRLKVIDAFKDSSI
KPEWMVLEVIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLVELDAPEIII
RNEKRMLQEAVDVLFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGR
SVIVIGPDLRLHQCGLPKKMALELFKPFIYNRLVNKGFSNSIKSAKKLVEKETPEVWDTL
SEVVKEYPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPL
SLEAQIEARVLMMSTNNILSPANGEPIIVPSQDIVLGLYYLTRERPLAKGERIPYDDYRP
VPFSSPEEVRIAYDQGTLDLHARIQVRMDGPKTSVAEIEELLHQGKIDPQARLKVQTEDS
TFITAAETLQSALDDRELDAQSPILVSQTGKVVTTTVGRILLREIMPEEVTFDSINRTMT
KKEIRKLIGESYRKCGIKTTVILADRLKDLGYKFATQAGISIAINDMMIPQRKAEILGQS
QAEVAEVEGQYREGLITEGEKYNKVVDIWARATDEVASEMMEEMARETVTGYRTNPEQEK
ILAEEETGSFNPIYMMADSGARGSDKQMRQLAGMRGLMAKPSGEIIETPITANFREGLTV
LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDCVITELDCGTIDGIDVTPLIEGG
EIIQRVGERVLGRTALEDIVNPNTGRVIVFANDEIDEEAAQQIEEAGIEKLRIRSVLTCQ
TRYGVCAKCYGRDLAHGTPVNIGEAIGIIAAQSIGEPGTQLTMRTFHIGGTASRRAEQSV
HLSRHRGKVQFDNLRTVRDFSGNLVALSRQGELIVVSAKGKERYPITYGTRLRVEEGQEV
GPDQMLAEWDPYTNPILTEVHGTVKFGDIIEQKDAEDPRDVTMQERVHTVTGKASKVIIE
CQNPEKRPRISIKDAAGRTARLPNSQAVARYPLPVGAIMMVSEGDEVNPGDVIAKIPRET
TKTKDIVGGLPRVAELFEVRKPKEHAVLSQISGTVSHGRQSKGKRKVLVSPDVGDPIEYL
IPKGKHIAVQEGERVKAGEPLMDGSANPHDILAISGLKELARYLVNEVQEVYRLQGVKIN
DKHIEVIVRQMLRRVRVTDPGDTNFLLGEQVEKHIFEEKNDEMASQGKRPATAEPLLLGI
TKASLSTESWISAASFQETTKVLADAAVAGRVDYLRGLKENVIMGRPIPAGTGLAKYRNI
KVQIQEEEPEAATAA
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatgcgcgaagtaaatttagaagatatcaacagcatttttgccaaaccaaaa
gacccgctccagtttaacgccgtacggatttccctggcgtctccggagatgatccgatcc
tggtcctatggcgaggtgaaaaagccggaaactattaattatcgaaccttcaaaccggaa
cgggacggcctcttctgcgccaaaatcttcggccccaccaaagattatgagtgcaactgc
ggcaaatacaagcggatgaagcatcgcggggtggtctgcgaaaaatgcggcgtggaggtc
atccaatccaaggtcaggcgagaacggatgggacatattgaacttgcctgcccggtggtg
catatctggtttttgaagagcctgccgagtaagatcggcaacctcttggacctgacatta
aaagatcttgaaaaaatcctctactttgaatcctatgtagtcattgacccgaaaaatact
gctctccgcaaaggcgaaatcctgagtgaagagaaatttcgccaggcccgggaggaatac
ggcgatgaattcgaagctggcatgggggccgaagccatacgggatatgctaagtaacctg
gacctgacgccgctttccgaacaattgcgggaggagatgcagaaaaccagttccgaagca
aaacgcaaaaaaatcagtaaacgccttaaggtcattgatgccttcaaggattctagcatc
aagccggaatggatggtcctggaggttatccctgtcctgccccccgatttgagacccctg
gtccccctggatggcggccgctttgccacctcagacctaaatgatctctaccggcgggta
attaacagaaataaccggttgaaacgcctggtggagctcgacgccccggagatcattatc
cgcaatgagaaacggatgctgcaagaggcggtcgacgtcctctttgacaacggccgtcgg
ggcaagacaatcaccggccccaataagcggccgctcaaatcgctcagtgacatgctcaaa
ggtaagcagggacgcttccgccagaatcttttgggaaaacgcgtcgactattccgggcgt
tcggtcatcgtcatcggccccgatctgcgcctgcaccaatgcgggttgcctaaaaagatg
gccctggaattgtttaaaccattcatttacaaccgcttagtcaacaagggattttccaat
tcaattaaatcagccaaaaaactggtggaaaaagaaaccccggaagtgtgggacaccctc
agcgaagtagtaaaagaatatccggtaatgttgaaccgggccccgacgttgcaccgcctg
ggcatccaggccttcgagccgattctcgtggaaggcaaggctatccaactgcatcccctc
gtttgcactgccttcaacgccgacttcgatggcgaccagatggctgtgcacgtaccacta
tcgctggaggcccagatcgaggccagggtattgatgatgtccactaacaacatcctttcc
ccggccaacggggaacccatcatcgtgccatcgcaggatattgttttagggctctattac
ctcaccagagaacgtcctctggccaaaggggagcggatcccctatgatgactatagacct
gttcccttttcctcaccggaagaggtccgcatcgcttacgaccagggaacgttagattta
cacgcccggatccaagtcaggatggacggcccgaagacctcagtggcagaaattgaagaa
ctgctgcatcaggggaagatagacccgcaggcgcggttgaaggtacaaaccgaagattcg
acctttatcaccgcagccgagaccctgcaatcagcgctggatgatcgagaattggatgca
caatcgccgatcctggtcagccagactggcaaagtcgtcaccaccacggtcggccgcatc
ttgctgcgggaaattatgccggaagaagttactttcgatagcattaaccggaccatgacg
aaaaaagagatccgcaagttgatcggtgagtcctaccgcaagtgtggtatcaagaccact
gtgatcctggcggaccggctaaaagacctgggatataaattcgccacccaggccggtatt
tccatcgccatcaacgatatgatgataccgcagcgtaaagcggaaatcttaggtcagtca
caggcggaggtcgccgaagtcgagggacagtatcgggaagggttgatcaccgaaggggag
aaatataataaagtagtggacatctgggccagagccacggatgaagtcgcctccgaaatg
atggaagaaatggcccgggagaccgtaaccggataccgtacgaaccccgaacaggaaaaa
atcctcgcagaagaggaaaccggaagctttaacccgatctatatgatggctgactccggg
gcccgcggtagtgataagcagatgcggcaattggccggaatgcgcggtctgatggccaaa
ccttcgggtgaaatcattgaaacccccatcaccgccaatttccgggaaggcttgaccgtg
ttgcaatactttatctccacccacggcgcccggaaaggtctggccgatacggcgttgaaa
accgctaattccggttacctcacccgacggttggtggacgttgcccaggattgtgtgatc
accgaattagactgcggcaccatcgatggcatcgacgttacaccgctcattgaaggtggt
gagattattcaacgggtaggcgaacgtgtgctgggccgaaccgccctggaagacatcgtc
aaccccaataccggtcgggtcattgtcttcgccaacgacgaaatcgacgaagaggctgct
caacagatcgaagaagctggcatcgaaaaacttcgtatccgctcggtgctcacctgtcag
acccgatatggcgtgtgtgccaaatgctacggccgagacctggcgcatggcacgccggtg
aacatcggcgaggccattggcatcatcgccgcccaatccatcggtgaaccgggtacccag
ttgacgatgagaacgtttcacatcggcggcacggcctcccggcgggctgaacagagcgtc
cacctgtcccgccatcgcggtaaggtgcagtttgacaacttgcgcaccgtgcgcgacttt
agcggcaacctggtggccctgagccgtcagggtgaactcatcgtggtaagcgccaaaggg
aaagagcgttatcccatcacctacggcacccgcctcagagtggaggaaggccaggaggtt
ggacctgaccagatgctggcggaatgggatccctataccaacccgatcctcaccgaggtg
cacggtacggtcaagttcggcgatattattgaacagaaagacgccgaagacccccgggac
gtcaccatgcaggagagggttcacaccgtcacggggaaggcgtccaaggttattatcgaa
tgccaaaatccggaaaaacgcccgcggatatccatcaaggatgcagccggacgcacggcc
cgcctgcccaactctcaggcggtagcccgttatcccctgccggtaggagccatcatgatg
gtttctgaaggcgatgaggtaaatccaggtgatgtcatcgccaagattccccgcgagacc
accaaaaccaaggatatcgtcggcggcttgccgcgggtggcggaactgtttgaggtgcgc
aaacccaaagagcacgccgtcctttcgcagataagcggcacggttagccatggccggcaa
tccaaaggcaaacgcaaggtcctggtttctcccgacgttggcgaccctatcgaatacctg
atcccaaaaggcaaacacattgccgtccaagagggtgaacgggtcaaggccggtgagcct
ttgatggacggctccgccaacccccacgacatcctggccatcagcggtctgaaagaattg
gctcgctacttggtcaatgaagtccaggaagtataccgcctccaaggtgtgaagatcaac
gataaacatattgaagtaatcgtcaggcagatgctccggcgggtccgtgtaaccgatccc
ggcgataccaactttctcttgggtgaacaggttgaaaaacatatcttcgaagagaaaaac
gatgagatggcatcacaagggaaacgtccggccactgccgaacctctgttgttgggcatc
accaaggcctcactgtcaaccgaaagctggatctcggcggcttccttccaggagaccact
aaagtgctggcggacgctgccgtagccggacgggtggattatctacgaggcctgaaagaa
aacgtcattatgggaagacccatcccggcaggcaccgggttggctaagtaccgcaatatt
aaggtacaaattcaagaagaggagcctgaagcagccacggctgcataa
DBGET
integrated database retrieval system
