Denitrovibrio acetiphilus: Dacet_0258
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Entry
Dacet_0258 CDS
T01189
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dap
Denitrovibrio acetiphilus
Pathway
dap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dacet_0258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dap03400
]
Dacet_0258
Enzymes [BR:
dap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dacet_0258
DNA repair and recombination proteins [BR:
dap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dacet_0258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF1828
MFD_D3
UB2H
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ADD67060
UniProt:
D4H2J9
LinkDB
All DBs
Position
complement(280155..283466)
Genome browser
AA seq
1103 aa
AA seq
DB search
MSLLSSLWGCSSIWHFYNNRPKGRVSILVAGNKREYDLIMQEAEFFFSGVRVLGFPEYTQ
DPYEEARVLPEVFAKRASTLDFLLNADASCILVTTPYGLLKSLPPKDVFASATADIKVGG
TYEREELEYILAYSGYVHVEMVEGAGEYAFRGDTLEVFPADSETPCLIEFFDDEAERISY
VDIRTRRTLKIEKTVRLLPASEALFDVDDLRKYINDSDILDKVELYGKYAGCHWLTPAVH
NMENLMDYVSESYNFLFFTEDYRSIFTDFRVLIDDKMPEGENFWNNNFIAPSRMLFYMTE
DRVNVMADITTAESEGTRYKSSAMLFAGKKGNLYQSMSAAMDIIKSYAEKSFRVICSIES
DRLAKLFSEFSKDYAFIPAKVENYKEVDKAGLYLHSEKFRGGFIDEKLMLAVFTDEDIFG
TAKKRPKRGKKELYSTTISDLEPGDHVVHVDYGIGIYLGLVHQSIGGVEGDFIQLEYDNS
EFLYVPLSSIGQIQKYIGSEGSRPRVSSLQTQQWKKVKAQAKARAKKIAMDLLKLYAQRK
VEKGFSFTDDGNMLDNFEQSFEYDETDDQLSAIHDVYNDMESAMPMERLVCGDVGFGKTE
VAMRAACKAVAGGKQVAVLVPTTVLARQHYMTFFERFKDLPVKVDYVSRFRTARDTRQIL
VDLSKGDLDILIGTHKMLSKEIEFQDLGLLIIDEEQRFGVAHKEKIKAMRSNVDVLYLSA
TPIPRTLQLSLSGIRDISTIDTPPVDRLPVITKVIKRDVEVKNAIQRELERGGQVFFLHN
RVENIQTVAAGVKNMLPGANVSIAHGQMTSSELEKILMEFYSGKTDVLVCTAIIENGIDI
ANANTIVINDAAHLGLAQIYQLKGRVGRSGRRGYCYLVVEQFSSLSDVAQKRLKIIQQLS
DLGSGVKIAFYDLQLRGAGDLLGADQSGFMVKVGYELFIAMIDEAVKDLKGITSISADTE
IITAIPHFIPADYIEDTKIRLDYYRKFSGVEDMDSVRELLYELSELYGELKPETENLGRI
MLIKKLAGFANMEKVYLYSNKVKMVFTKGTPSNPQRIMDAIANAGAGSKFDNEFTLSLFF
EKEQKVLDKTVSFINELIKIPTV
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgtctttacttagcagcctttggggatgttcctccatatggcacttttataacaacaga
ccgaaggggcgtgtcagcattcttgttgcagggaacaagagggaatacgaccttatcatg
caggaggccgagttcttcttctccggtgtgcgggtacttggttttcctgagtatacgcag
gatccttatgaggaagcccgtgttttgccggaggttttcgcaaaacgtgcatccactctg
gactttctgctgaacgctgatgcgagctgcatccttgtcactactccgtacggacttctg
aaatcattaccaccgaaagatgtttttgcttctgccacagcggatatcaaggtcggaggc
acatatgaacgggaagagctcgaatatatccttgcctactccgggtatgtgcatgtggaa
atggttgagggtgcaggagaatatgcattcagaggcgatacgcttgaggtttttcccgca
gatagtgaaaccccttgtctgatagaattttttgacgatgaggcggagcggatatcttat
gttgatatacgtacgagacgcactctcaaaattgaaaaaactgtaaggctccttccagca
tcagaagctctttttgatgtagatgacctcaggaaatatataaatgacagtgatatttta
gataaggtagagctatatgggaaatatgccggatgtcactggctgacccccgctgtgcat
aatatggaaaacctgatggactatgtgagcgaaagctataattttctgttctttacggaa
gattacaggtcgattttcacagattttcgtgtgctcatagatgataaaatgcctgaaggt
gaaaacttctggaacaataattttattgcaccttcacgtatgcttttttatatgaccgaa
gacagagtaaacgtgatggcggacatcacaacagctgaaagcgaagggacaaggtataaa
agcagcgccatgctctttgccgggaagaaaggcaatctttatcagtcaatgtctgctgct
atggatattatcaagagctacgcagaaaaatctttccgtgtgatatgttctatagaaagt
gaccgtcttgcaaaacttttctctgagttttcaaaggattatgcgtttatacctgctaaa
gttgaaaactataaagaggtggacaaggcagggctttatctgcattcagaaaaatttcgc
ggcgggttcatagatgagaagctgatgcttgctgttttcacagatgaagatatattcggt
acagcaaagaaaagacctaaacgcggtaaaaaagaactttactccacaactatatctgac
cttgagcccggggatcatgtcgttcatgtcgattatggtataggaatctaccttggtctg
gtgcaccagagcatcggcggtgtggaaggtgattttatacagcttgagtatgacaacagt
gaatttctgtacgtgccgctatcctcgatagggcagatacaaaaatacattggctcggaa
ggctcaagaccgagagtcagctctcttcagacacagcagtggaaaaaagttaaagcgcag
gcaaaggcaagggcgaagaagatagccatggatctgctgaagctttacgcccagcggaaa
gtagagaaaggtttttcgtttactgatgacggaaacatgctggataatttcgagcagtcg
tttgaatatgatgaaaccgatgatcagctttctgcgatacacgacgtttataatgatatg
gaatctgcaatgcctatggaaaggcttgtttgcggtgatgtcggctttggtaaaacagaa
gtggctatgcgtgccgcatgtaaggctgttgccggagggaaacaggtcgctgtgcttgtc
cccaccacagttctcgccagacagcactatatgactttttttgaacggtttaaggatttg
cctgtaaaggtagactacgtgagccgtttccggactgcaagagataccagacagatactt
gttgatctctcaaagggtgatctggatatactgataggtactcacaaaatgctgtccaaa
gagatagagtttcaggatctcggacttttgatcattgatgaagaacaacgctttggcgtg
gcacataaagagaagattaaagctatgcggagcaatgttgatgttctgtatctttcagcg
acacctatccccagaactctccagctttcgctttcaggcataagggatatatcaaccata
gatacaccgccggttgacaggctgcccgttatcacaaaggttatcaagcgtgatgttgag
gttaaaaacgccatccagagggagcttgaacggggcggtcaggtatttttcctccataac
agagtagaaaatattcaaacggtggctgccggtgttaagaacatgctgccgggggcgaac
gtttccattgcacatggtcagatgacaagctcggagctggaaaagattcttatggagttt
tattcgggcaaaacagatgttcttgtatgtaccgcaataattgaaaacggaatagatatt
gcaaatgcaaataccatagtgattaatgatgccgctcacctcgggctggcacagatatat
cagcttaaggggcgtgtcgggcgttcagggagacgtggttactgttatcttgtggtggaa
caattttcgtctttgtcggatgttgcacaaaagagacttaagataatccagcagctttca
gaccttggcagcggcgtgaagatcgcgttttacgaccttcaacttcgcggtgcaggcgac
ctgctgggtgctgaccagtcaggattcatggtgaaagtcgggtatgagctttttatcgcc
atgatagacgaagcagtgaaagacctgaaagggataacgagcatctccgcagatacggag
ataattacagcaattccgcattttatccctgctgactatattgaagatactaagatcagg
cttgattactatcgtaagttctcaggtgttgaggatatggatagtgtgcgggagctttta
tatgagctttcggagctttacggtgagctgaaaccggagactgaaaatctggggcgcatt
atgcttataaaaaaactggcaggctttgcaaatatggaaaaagtctatctttacagcaat
aaagttaagatggtttttacaaaagggacaccttcaaaccctcagagaattatggacgct
atagctaatgccggcgcaggctcaaagtttgacaatgaattcaccctgtcgctgtttttc
gagaaagagcagaaagtccttgataaaacggtatctttcattaatgaacttattaaaata
cccacagtctga
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