Dickeya aquatica: DAQ1742_00704
Help
Entry
DAQ1742_00704 CDS
T06021
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, 50S ribosomal subunit biogenesis; translation factor W2; facilitates translation of mRNAs with 5' secondary structures
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
daq
Dickeya aquatica
Pathway
daq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAQ1742_00704 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daq03019
]
DAQ1742_00704 (deaD)
03009 Ribosome biogenesis [BR:
daq03009
]
DAQ1742_00704 (deaD)
Enzymes [BR:
daq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DAQ1742_00704 (deaD)
Messenger RNA biogenesis [BR:
daq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DAQ1742_00704 (deaD)
Ribosome biogenesis [BR:
daq03009
]
Prokaryotic type
rRNA helicases
DAQ1742_00704 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SLM61785
UniProt:
A0A375A6Y4
LinkDB
All DBs
Position
705494..707380
Genome browser
AA seq
628 aa
AA seq
DB search
MAEFETSFASLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKAELKAPQMLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGQRRLAQFAAKVQQQLESSDLDQYRALLAKLQPADELDVET
LAAALLKMAQGERPLILPPDAPARPRREFREREDRFERRGERNDRGPRTERSGSDERPAR
RERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM
PGELLSHFTRTRILNKPMNMQLMGDAQPHERRERREGGERGERGGRGFGERAGSGNGRRP
FAGERREGGGERRGNREGQRAPRRFNDA
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctagcttggggctgtctgctcctattttgaatgca
ctgtctgacatggggtatgaaaaaccgtccccgattcaggcggagtgtattccccatttg
ttgaacggccgtgatgtgctgggtatggcccagacaggtagcggcaagacagcggcgttt
tctttgccgttgctcaataacatcaaggctgaactgaaagcgccacaaatgctggtgctg
gcaccgacccgtgaactggcggtgcaggtagcagaagcctgtaatgaattctctaaacat
atgcagggtgttaacgtggtcgcactgtatggcggccagcgttatgacgtgcagttacgt
gccctgcgtcaggggccgcagatcgtcgtcggtacgccgggtcgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagcggtctggtactggatgaagccgacgaa
atgttgcgtatgggctttattgaagatgtggaaaacatcatggcgcagatcccggctgaa
catcagaccgcgctgttctccgccaccatgccggaggcgatccgccgcattacccgtcgc
ttcatgaacgatccgcaggaagtgcgtattcagtccagcgtcaccacgcgcccggatatc
agccagagctactggacggtatacggcatgcgtaaaaatgaagcgctgatccgtttcctc
gaagcggaagactttgatgcagccatcattttcgtgcgcaccaagaatgccacgctggaa
gtggccgaagcgctggagcgcagcggttataacagtgcggcgctaaatggtgacatgaac
caggcgctgcgtgagcaaacgctggagcgcctgaaagatggtcgtctggatatcctgatt
gccaccgacgttgccgctcgtggtctggacgttgagcgtatcagtctggtggtgaactac
gatatcccaatggattccgagtcctatgttcaccgtatcggccgtaccggccgtgcgggc
cgtgccggccgtgcgctgttgtttgtggaaaaccgcgaacgccgcctgctgcgcaatatt
gaacgcaccatgaagctgaccattcctgaagtggaattgccgaatgcggaattgctgggt
cagcgtcgtctggcgcagtttgcggcaaaagttcagcagcaactggaaagtagtgatctg
gatcagtaccgtgctctgctggcgaaattgcagcctgcggatgagctggatgtggaaacg
ctggcagcggctctgctgaaaatggcacagggtgaacgcccgctgatcctgccgccggat
gcaccggcacgcccgcgtcgtgaattccgtgagcgtgaagatcgtttcgagcgccgtggc
gaacgtaatgatcgtggcccgcggactgagcgcagtggcagtgatgagcgcccggctcgc
cgtgagcgtcgtgatgtgggtgaaatggagttgtaccgcattgaagtgggccgtgatgat
ggtgttgaagttcgccatatcgtgggtgccattgccaatgaaggtgacatcagcagccgt
tatatcggtaacatcaagctgtttgcttctcactcaaccatcgagctgccgaaaggaatg
ccgggagaattgctgtcgcatttcactcgtacccgtattctgaacaagccgatgaatatg
caactgatgggtgatgcacagccgcatgaacgtcgtgagcgccgtgaaggcggtgagcgt
ggcgaacgcggtggtcgtggtttcggtgaacgtgctggcagcggtaatggccgccgtccg
tttgccggtgagcgccgtgaaggtggtggtgagcgtcgtggcaaccgtgaaggccagcgt
gcaccacgtcgtttcaatgacgcctga
DBGET
integrated database retrieval system
