Dickeya aquatica: DAQ1742_01042
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Entry
DAQ1742_01042 CDS
T06021
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase, 50S ribosomal subunit biogenesis, stabilizes exposed mRNA
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
daq
Dickeya aquatica
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
daq03009
]
DAQ1742_01042 (srmB)
Enzymes [BR:
daq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DAQ1742_01042 (srmB)
Ribosome biogenesis [BR:
daq03009
]
Prokaryotic type
rRNA helicases
DAQ1742_01042 (srmB)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UBA_7
AAA_11
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SLM62069
UniProt:
A0A375A8V4
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All DBs
Position
complement(1033074..1034420)
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AA seq
448 aa
AA seq
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MTATHFSEFDLDDSLLNALSDMGFSRPTAIQAAAIPPAMEGRDVLGSAPTGTGKTAAYLL
PMLQHLLDFPRKKSGPPRILILTPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTLLFSATLEGDAIKDFAERLLNDPVEVEADPSRRERKKILQWYYRADTIEHKTALLA
HLLKQPDVTRSIVFVRKRERVHELVGWLRSAGIEPCYLEGEMVQAKRNEAIKRLSEGRVN
VLVATDVAARGLDIADVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISLVEAHDHLLL
EKIGRYLNEPLKARVIDELRPTTRAPSARTTGKPSKKVLAKRKEQKQKEQEKQKAKVKVR
HRDSKNIGKRRQPSTKADAVQEKTQPKQ
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgacccatttttccgagtttgatcttgatgacagcctgcttaacgcattaagc
gatatgggctttagccgcccgaccgcgattcaggctgcggccattccaccggcgatggaa
gggcgcgatgttttaggctccgcgcctaccggaaccggtaaaaccgccgcctatttactg
ccgatgctccagcatttgctcgatttcccgcgtaaaaaatccggccctccgcgaattctc
atcctcaccccgacccgggaactggcgatgcaggtggcagatcaggcccgggcgttagcc
gcacatacgcatctggatattgcgactattaccggcggtgtggcttatatgaaccacgca
gaggtgttcagcgagaatcaagatgtggtggtcgccaccactggtcgcctgctgcaatac
atcaaagaagagaattttgactgccgggccgtcgaaacgctgattctggatgaggccgac
cgcatgctcgatatgggctttgcgcaagatatcgaacacatcgcaggagaaacacgctgg
cgtaaacaaaccctgctgttttctgccaccctggaaggcgacgccattaaagattttgcc
gagcgcctgctcaatgacccggtagaagtcgaggctgacccttcacggcgcgagcgcaag
aaaatcctgcaatggtactaccgtgctgacaccattgagcacaaaactgcacttcttgcc
catctccttaagcaacctgatgtcacccgttcaattgtgttcgtgcgcaaacgtgagcgt
gtccatgaactggtgggctggttgcgttcggcaggtatcgaaccctgctatctggaaggc
gaaatggtgcaggccaaacgcaatgaggccatcaaacgtctcagcgaaggccgggttaac
gtgctggtggcaactgatgtcgctgctcgcgggctggatatcgctgatgtcagtcatgtt
tttaacttcgacttgcctcgcacagcggatacctatttgcaccgtattgggcgtaccggt
cgtgcgggccgtaaaggctgtgcgatttcactggtagaagctcatgaccatctgctgctg
gaaaaaatcggccgttaccttaacgagccgctcaaagcacgcgtgattgatgaactacgc
ccgactacgcgagcccccagcgccaggacgaccggtaaaccctcgaaaaaagtgctggcg
aaacgtaaagagcagaagcagaaagaacaagaaaaacaaaaagcgaaagtaaaagtacgt
caccgcgacagtaaaaacatcggcaaacgacgccagcccagcactaaagctgatgctgtg
caggaaaaaacgcagcccaagcaatga
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