Dickeya aquatica: DAQ1742_01956
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Entry
DAQ1742_01956 CDS
T06021
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
daq
Dickeya aquatica
Pathway
daq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DAQ1742_01956 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daq03400
]
DAQ1742_01956 (recD)
Enzymes [BR:
daq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DAQ1742_01956 (recD)
DNA repair and recombination proteins [BR:
daq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DAQ1742_01956 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
NAT10_TcmA_helicase
AAA_22
SLFN-g3_helicase
UvrD-helicase
NTPase_1
AAA_28
nSTAND3
IPPT
T2SSE
Motif
Other DBs
NCBI-ProteinID:
SLM62886
UniProt:
A0A375AAE9
LinkDB
All DBs
Position
1978232..1980286
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AA seq
684 aa
AA seq
DB search
MKHSDHHEVLALLDQWVDSGWLRELDRALARFLYQECPDAAPLLLLGAALTSYQLGRGHV
CLDLAALVTDSDLSLALPPENGYDSRDATPRPAQALHGVTLADWQAALAQPQLVACGTGN
TPLVLAGTRLYLRRYWQYEQQVRQAIDRRLADNAALKQALPVAALRQRLDALFPATSPLQ
PDWQKLACALAAGSAFSIITGGPGTGKTTTVLKLLALLQSLALEQHGKPLRIRLAAPTGK
AAARLNASITGAIDTLALGGLAQAQEIRTSLMSEAVTLHRLLGSRPDSRRFRHDETQLLR
LDVLVVDEASMVDLAMMSALLAAMPPAARLVLLGDKDQLASVEAGALMGAWCQRAEQGHY
LPQTRDWLQAVTGQAPQETLVDAQGLAHDQAVVMLRHSYRFGADSGIGRLAQAVNRGDVT
SLETILQQGYPDLACLLLTPDDTPALKAWLVDGAVGHVGASGGFAAGYRHYLQLMHDTRP
ALTSSPQAFDEWAASILNAFGEFQLLCALRSGPCGVESMNARIAGLLHREQLLDCGQVWY
PGRPVMVTRNDYSLQLMNGDIGITLSVAQQQADGSHIWVNRVAFAAGDGRAGVRWVLPGR
LSAVETVFAMTVHKSQGSEFTHTALLLPDNLSPVLTRELIYTGITRARHYFSLGCAGRHR
AVLAEAVSRRVQRVSGFMDEESAC
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacagcgatcatcatgaggtactggcactgcttgaccagtgggttgatagtggc
tggctgcgtgagcttgaccgggcgctggcgcgttttctctatcaagagtgcccggatgcc
gccccgctgttattgcttggcgcggccctgaccagttaccagttagggcgcggccatgtc
tgcctggatttagcggcgctggtgacggacagcgatctctcgctggcactgccgcccgag
aatgggtatgacagccgtgacgccacaccgcgcccggcgcaggcgctgcacggcgtgacg
ctggctgactggcaggcagcactggcacaaccgcaactggttgcctgcggtacgggtaac
acgccgctggtgctggcgggcacccggctttatctgcgccgttactggcagtatgagcag
caagtgcgccaggcgattgacaggcggctggcggataacgcggcgctgaaacaggctctg
cctgtcgccgcattgcgccagcggcttgatgcgctgtttcctgccacgtccccgttgcag
ccagactggcagaagctcgcctgtgcgctggcggccggaagcgcatttagcattattacc
ggcgggcccggcaccggcaaaaccaccacggtgctgaaactgctggcgctgttgcagtct
ctggcgctggagcagcacggcaagccgctgcgcatccggctggcggccccgaccggcaag
gcggcggcccgccttaatgcatcgataaccggagctatcgatacgctggcgctggggggg
ctggcgcaggcacaagagattcgcaccagcctgatgagcgaagccgtgacgttgcatcgt
ttgctcggcagtcggccagacagccgccggtttcgtcatgatgaaacgcagctattgcgc
ctggatgtgctggtggtggatgaagcctccatggtcgatttggcgatgatgtcggcgctg
ctggccgccatgccgcctgcggcaaggctggtactgctgggcgataaagaccagttggcc
tcggtggaagccggtgcgctgatgggcgcatggtgccagcgggccgaacaagggcactat
ttgccgcaaacccgtgactggctacaggccgtgaccgggcaggccccgcaggagacgctg
gtggacgcgcaagggctggcgcacgatcaggcggtggtgatgctgcgccacagctatcgg
tttggcgctgacagcgggattggccgcctggcacaagcggtaaatcgcggcgatgtcacg
tcgcttgagacgatattgcagcaaggctatcccgatttggcctgcctgctgttaacccct
gacgataccccggcgctcaaagcatggctggttgatggtgccgttggccatgttggcgca
tcgggtggctttgcggcggggtatcgccactatctgcaattgatgcatgacacccgcccg
gcgctaacgtcctccccacaggcgtttgatgagtgggccgcgtcgattctcaacgcgttt
ggcgagtttcaactgctgtgtgcgttaagaagcgggccctgtggggttgagagcatgaac
gctcgtatcgccgggttattacaccgtgaacagttgctggattgcgggcaagtgtggtat
ccgggccggccagtgatggtgacgcgcaacgattacagcctgcaactgatgaacggcgat
atcggcatcacgttatcggtagcccagcagcaggcagatggctcgcacatctgggttaac
cgggtggcctttgccgccggcgatggccgcgcaggtgtgcgctgggtgttaccggggcgt
ttgtcggcggtggaaaccgtgtttgccatgacggtgcataaatcgcagggctccgagttc
acgcacactgcgttactgctaccggacaacctcagcccggtattaacccgcgagcttatc
tacaccggcattacccgcgccagacactacttcagcctcggctgcgccggtcgtcatcgc
gcggtgctggccgaggcagtcagccgccgggtgcagcgtgtcagtgggtttatggatgag
gagtctgcttgctga
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