Dickeya aquatica: DAQ1742_02599
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Entry
DAQ1742_02599 CDS
T06021
Symbol
moc
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
daq
Dickeya aquatica
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daq03019
]
DAQ1742_02599 (moc)
Enzymes [BR:
daq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DAQ1742_02599 (moc)
Messenger RNA biogenesis [BR:
daq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DAQ1742_02599 (moc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
ResIII
PhoH
NACHT
T2SSE
nSTAND3
SLFN-g3_helicase
FtsK_SpoIIIE
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
SLM63473
UniProt:
A0A375ABM4
LinkDB
All DBs
Position
complement(2623662..2627549)
Genome browser
AA seq
1295 aa
AA seq
DB search
MTSPLHALEPELNALMLRDRQRLRRRLQGAMKVGNPQAQAAIAQEISQEIARARAYVAQR
QASRPAIHYPESLPVSQKREEILAAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGL
IGHTQPRRLAARSVADRIAAELETSTGSTVGYKVRFNDQVSETTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNQA
PVIEVSGRTYPVEVRYRPVVDEAQDSDRDQLQAILDAVDELCHEGPGDILVFMSGEREIR
DTADALNKLDLPHTEVLPLYARLSSQEQNRVFHSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAAGICIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTALGLGDIDAFPFVEAPDKRNILDGVRLLEELGALETREDGPYR
LTPQGRQLAQLPIDPRLARMVLEARQTSCVREAMIITAALSIQDPRERPAEKKQAAEEKH
RRFADKESDFQAFVNLWDYLQAQQKALSSGQFRKLCRTEYLNYLRVREWQDIYTQLRQVV
KELGFPVNSEPADYRSLHCALLTGLLSHIGQKDVEKQEFSGARNTRFALFPGSGLFKKPP
KWAMVAELVETSRLWGRIAARIEPEWVEPLAQHLVKRSYSEPHWEKAQAAVMAQEKVTLY
GLPIVAARKVNYGTIDPVVSRELFIRHALVEGDWQTRHAFLRANQALRQEVEELENKSRR
RDILVDDDTLFAFYDQRIGQDVVSGRHFDSWWKQASQANPDQLNFEKTMLIKDGAQRVSA
LDYPNYWQQGELRLRLTYQFEPGADADGVTVHIPLPVLNQVKEEGFEWQIPGLRNALIVA
LIKSLPKPVRRNFVPAPNYADACLARVTPLEKPLLDALERELRLMTGVSVDRDSWQWDQV
PDHLKMTFRVVDDKHRALREGKSLRALKEQLQDKVQQTLSAVADDGIEQRDLHIWSFGSL
PECYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQMMWRGQRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLMAQAGGPAWQEADFRQLHERVRAEL
NETVVDIARQVEQILTAVFTINKRLKGRVDMALALALGDIKSQMNGLVFRGFVTDNGWQR
LPDVLRYLHAIERRLDKLAQDVHRDRAQMLKVGQVQQAWQQWLGKLPPERREEEEVKAVR
WMIEELRVSYFAQQLGTPYPISDKRIVQAMEQIDG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcacctcttcatgcgttagaacccgaactgaatgccctgatgctgcgcgaccgc
cagcgtttgcgccgccgtttacagggggcgatgaaagtgggcaacccccaggcacaagcg
gcaatcgcgcaagaaatcagccaggagatagcgcgagcccgcgcctatgtggcgcagcgc
caggcatcacggcctgcgatccattacccggagtcattgccggtcagccaaaagcgtgag
gagattctggcggcaatacgtgaccatcaggtggtgatcgtcgccggtgaaaccggatca
ggtaaaactacccagttgccgaaaatgtgtctggaactggggcgaggtgtcaccgggttg
ataggccacacccagccgcggcggctggcggcccgcagcgtggccgatcgcattgccgca
gagctggaaacctcgaccggtagcacggtggggtataaggtgcgttttaacgatcaggtc
agcgagacgacgctggtcaagctgatgaccgacggtattttgctggcggaaatccagcaa
gaccggctgttgatgcagtacgacacacttatcatcgatgaggcccatgaacgcagcctc
aatattgattttattctcggttacttacggcaactgttgccaaaacgcccggatctcaaa
gttatcatcacctcggccaccattgatccgcagcgtttttcccgtcatttcaatcaggct
cctgtgattgaagtttccgggcgaacctatccggtagaggtgcgctatcgcccggtggtt
gatgaggcgcaagacagcgatcgtgaccagttgcaggccattttggatgccgtggatgaa
ctctgccacgaagggccgggcgacattctggtgtttatgagcggtgagcgtgaaattcgt
gacacggcagatgcgctcaataagctcgacctgcctcacaccgaggtattaccgctctat
gcgcggctctccagtcaggagcaaaaccgggtgtttcactcccaccacgggcggcgcatt
gtgctggcgaccaacgtggcggaaacctcgctgacggtgccgggtattcgttatgtgata
gaccccggcacggcgcgcatcagccgttacagctatcgcaccaaggtacagcgcctgcct
atcgagccgatatcacaagcctcggccaatcagcgtaaagggcgctgcgggcgtgtcgcg
gcgggtatctgtattcgcctgtactccgagcaggattttctctcgcgcccggcctttact
gacccggaaattctgcgcaccaacctggcgtcggtcattttgcagatgacagcgctgggc
cttggcgatattgacgcctttccctttgttgaagcgccggataagcgcaacattcttgat
ggcgttcgcctgctcgaagagcttggtgcgcttgaaacccgcgaggatggcccgtaccgg
ctgacgccgcaggggcggcaactggcacaattgcccatcgacccgcgtctggcacgtatg
gtgctggaagcccgccagaccagttgtgtgcgtgaagcgatgatcattaccgctgcgctg
tcgattcaagacccgcgcgagcgcccggcagagaaaaagcaggccgcggaagaaaagcac
cgtcgctttgccgataaagagtcggattttcaggctttcgttaatctgtgggattacctg
caagcgcagcaaaaagcgctctcttccggtcagtttcgcaaactgtgccgcaccgagtac
ctgaattatctacgggtgcgcgaatggcaggatatctacacccagttgcgtcaggtggta
aaagagctcggtttcccggtgaacagtgaaccggcggattaccgcagtttgcactgcgca
ctgctgaccgggctgttatcacacatcggacaaaaagatgtcgaaaagcaggagtttagc
ggtgcgcgcaatacccgttttgccctgttccccggctccggcttattcaaaaaaccgccc
aagtgggcgatggtggccgaactggtggaaaccagccgcttgtgggggcgcattgccgcg
cgcattgaaccggagtgggtggagccgctggcccagcatctggtgaagcgcagttacagt
gagccgcactgggagaaagcgcaggcggcggtgatggcgcaggagaaagtgacgctgtat
ggcctgccgattgtggcggcgcgtaaagtcaactacggcacgattgacccggtagtatcg
cgcgagctgtttatccgccatgcgctggtggaaggtgactggcaaacccggcatgcgttt
ttgcgcgccaatcaggcgctgcgccaggaagtggaagagctggaaaacaaatcgcgccgt
cgtgacattttggtcgatgacgacacgttatttgcgttttacgatcaacgtattgggcag
gatgtggtgtccgggcgtcactttgatagctggtggaagcaggcctcgcaagcgaaccct
gaccagctcaattttgaaaaaaccatgctgattaaagacggtgcacagcgggtcagcgcg
ctggattacccgaattactggcagcagggggagttgcgtttgcgcctgacttaccagttc
gagccgggagccgatgccgatggcgtgacggtgcatattccgctgccggtactcaatcag
gtgaaagaagaggggtttgagtggcagatcccggggctgcgaaacgcattgatagtggcg
ctgataaaatcactgcccaaaccggtgcggcgtaattttgtcccggctcccaactatgcc
gatgcctgtctggcgcgggtgacgccgctggaaaaaccactgctggatgcgctggagcgg
gaattgcgcctgatgaccggcgtgagcgttgatcgcgacagctggcagtgggatcaggtg
ccggatcatctgaagatgaccttccgcgtggtggatgataagcaccgtgcgctgcgcgaa
gggaagagcctgcgtgcgctgaaagagcaattacaggataaggtgcagcaaacgctgtca
gcggtggcggatgacggtatcgaacagcgtgatttgcacatctggagttttggctcgctg
ccggagtgctatgagcaaaagcgcggcggttattcggtaaaagcctacccggcattggtg
gatgagaaagacagcgtagccattcgcctgtttgatacgccgcatcagcaacagcaaatg
atgtggcgtggtcagcgtcgtttgctgctgctgaacattccatcgccgatcaagtacctg
cacgaaaaactgcccaacaaagccaaactggggttgtactttaacccgtatggcaaagtg
ctggagttgattgatgactgcatcgcctgtggcgtggataaactgatggcgcaggccggt
ggcccggcctggcaagaagcggattttcgccagttgcatgagcgggtgcgcgctgagctt
aacgaaaccgtggtggatattgcccgtcaggttgaacagattctgacggcggtgtttacc
atcaataaacgtcttaaaggccgggtggacatggcgctggcgctggctctcggtgatatc
aaaagccagatgaacgggctggtgtttcgcggttttgtgacggataacggctggcaacgt
ctgccggatgtgctgcgttacctgcacgccattgagcggcggctggataagcttgcacag
gatgttcaccgcgatcgcgcccagatgctcaaagtcgggcaggtgcagcaagcctggcag
cagtggttaggcaagttaccgccggagcggcgtgaagaggaagaggtgaaagccgtccgc
tggatgatagaggaactgcgagtgagctattttgcccagcaactgggtacgccttacccc
atctctgataaacgtatcgtgcaggctatggagcagattgacgggtaa
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