Dickeya aquatica: DAQ1742_02701
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Entry
DAQ1742_02701 CDS
T06021
Symbol
rnb
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
daq
Dickeya aquatica
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
daq03016
]
DAQ1742_02701 (rnb)
Enzymes [BR:
daq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DAQ1742_02701 (rnb)
Transfer RNA biogenesis [BR:
daq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DAQ1742_02701 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
SLM63571
UniProt:
A0A375ACA4
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Position
2713890..2715821
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGTVKATDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
IVTLHTEKEREIAEPESLVEPFLSRFVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQ
DFKEGDWAVAEMRRHPLKGDRGFFADLTHYITTGDDPLAPWWVTLSRHNLERVAPQADAA
ELNDGALSREDLTGLDFVTIDSASTEDMDDALYVQERDDGSLEMTVAIADPTAYVPADSE
LDAIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPHERRPVLACRMTVAADGALSQVHFF
AAWIESRAKLVYDEVSDWLEQQGEWQPGSEAIASQIRLLHRVCQARSQWRATHALVFRDR
PDYRFVLGEKGEVLDIVTEPRRIANRIVEEAMIAANVCAATVLRDTLGFGIYNVHNGFDP
VSVEQAVTVLSGHGIRADAQQLLTLEGFCVLRRELDAQPTQFLDSRIRRFQSFAEISTTP
GPHFGLGLDAYATWTSPIRKYGDMVNHRLLKAIITGATADKPHDDVTQQLAERRRLNRMA
ERDVSDWLYARFLKEKAGTDTRFTAEIIDVNRGGLRIRLLDNGATAFVPASFIHAVRDEL
VCSQETGIVTVKGETVYRQSDTLQVVLTEVRLDTRNIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaacccgctgcttgcgcagctaaaacagcaactccactctcagacgcca
cgagcggaaggcaccgttaaagccaccgacaaaggattcggttttcttgaagccgacgcg
cagaagagctatttcatcccgccgccgcacatgaaaaaagtgatgcacggcgatcgtatt
atcgtcacgctgcacaccgaaaaagagcgcgaaattgccgagccagaatcactggtcgag
ccatttctgagccgcttcgtcggccgtgtgcaaaagaaagatgaccggttatcgattgtg
ccggatcatccgctgttgaaagacgcgatcccctgccgtccggcacgcggggtcgagcag
gatttcaaagaaggcgactgggcggttgccgaaatgcgtcgccatccgctcaagggcgat
cgcggcttttttgccgacctgacccactacattaccaccggcgatgatccgcttgcgccg
tggtgggtcacgctgtcacggcataatctggaacgtgttgcgccacaggccgatgcggca
gagctgaatgatggcgcgctttcacgcgaagacctgaccgggcttgatttcgtgaccatt
gacagcgccagcaccgaagatatggacgatgcgttgtatgttcaggagcgtgacgacggc
agcctggagatgactgttgccatcgccgacccgaccgcatatgtcccggctgacagtgag
ctggatgcaattgcccgccagcgtgcgttcaccaactatctgcctggcttcaacattccg
atgttgccacgtcacctgtccgatgatatctgctcgctgcgcccgcatgagcgccgtccg
gtgctggcgtgccgcatgacggttgccgccgatggcgcactcagtcaggtgcatttcttc
gctgcctggattgagtcacgcgctaaactggtgtacgacgaggtttccgactggctggaa
cagcaaggtgaatggcagccgggcagtgaggccatcgccagccagatccgtctgttgcat
cgcgtatgtcaggcgcgcagccaatggcgcgccacccatgcgttagtcttccgcgaccgc
cctgactatcgtttcgtgttgggcgagaaaggtgaagtgctggatatcgtcactgagccg
cgccggattgcaaaccgtatcgtggaagaggcgatgattgccgccaacgtctgtgcggcc
actgtgctgcgcgatacgcttggttttggtatctacaacgtgcataacggttttgaccca
gtgagcgtcgaacaggcggttacggtattatccggccacggcatccgcgctgacgcgcag
caattgctgacgctggaaggcttttgcgtactgcgccgtgagcttgacgcacaacccacg
caattcctcgacagccgcattcgccgtttccagtcgtttgccgaaatcagcacgacgccc
ggcccgcacttcggcctgggactggatgcatacgctacctggacatcgccgattcgtaaa
tatggcgatatggtcaaccaccggctgctcaaagcgattattaccggtgccaccgctgac
aaaccgcacgatgacgttacccagcaactggctgaacgccgccgcttgaaccgcatggcc
gagcgcgatgtcagcgactggctctacgcgcggttcctcaaggaaaaagcgggcaccgac
acacgctttactgctgagatcattgatgtgaatcgcggcggtctgcgcattcgcctgctt
gacaacggcgcaaccgcctttgtgcccgcctcgtttattcatgcggtgcgtgacgagctg
gtgtgcagccaggaaaccggtatcgtgaccgtgaaaggtgaaacggtttaccgccagagt
gacacactgcaagtggtgctgaccgaggtgcgccttgacacccgcaacatcattgccaaa
ccggcagcctga
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