Dickeya aquatica: DAQ1742_03257
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Entry
DAQ1742_03257 CDS
T06021
Symbol
sbcC
Name
(GenBank) exonuclease, dsDNA, ATP-dependent
KO
K03546
DNA repair protein SbcC/Rad50
Organism
daq
Dickeya aquatica
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daq03400
]
DAQ1742_03257 (sbcC)
DNA repair and recombination proteins [BR:
daq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DAQ1742_03257 (sbcC)
Archaeal homologous recombinant proteins
DAQ1742_03257 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_23
AAA_29
ABC_tran
AAA_21
cobW
NTPase_1
nSTAND3
TraF_2
AAA_22
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
SLM64075
UniProt:
A0A375ADF5
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All DBs
Position
3247992..3251675
Genome browser
AA seq
1227 aa
AA seq
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MKILSLRLKNLNSLQGEWKIDFTREPFASNSLFAITGPTGAGKTTLLDAICLALYHQTPR
LKVSPGQNELMTRHTADCLAEVEFEVKNVAYRAFWSQRRAHNSPDGNLQPPKVELALCAE
GKILTDKVNDKLAMIDDITGLDFDRFTKSMMLSQGQFAAFLNADANQRAELLEELTGTDI
YGHISERVFEKHKQAHIQLDTLKAKIATLELLSDEQRHSLEQQLDFIRQQEHSLSLQREE
IMTHQRWHDTLLQHQQAQRQAKQQRDAFEQLQRQSQTQIEKLRRSEPAEKLRPQLNERDR
AQKEKQRLQAQLTLLRQQLGRQQDAFSLLKIQLEKALIVRKQHAEQRQQQETLISERIQP
LDHQISTLQTQRTQQQQALDSLLEQQKTLIAALSRVQRQREQTQQQLAEVENYRQQYSSH
QFLGSHIPLWQAQFPQQQKWQQDLQVWQEKAAQQQIQSEYLEQQCASLTEKHLAQQKACE
RAQLLLNEHQQQYTQQEASQPLEALRQQLESHVAQQSDRQQLATHSAVLQQLLSQRTSLE
AQYLDTQRRIAALEQQQTQLRQSHQRQAEHLADLEKRHELELRIVSLENERQQLQPGKEC
PLCGATHHPAVARYQALRPSETQIRLHALRQEVETLQASVVQATTQLQLQEQQREQQHNA
IQRVQHDFDVLLQQCQIVSKRLLIDFDPLQSVTLNQWLEEASTKEQTLQSHIASRERSLR
QIQESKDLLTSAEKLRLHTQQQLALNAQQRESLQLARDELRQSLEKTQRELQRLHDSLSQ
TLAIFQLQAPALAQQEDWLRQRQTEWLRWQESELEQHRCQPQLAAQEAEITASQQRLSDI
ETALNVGQQQLADTLGTLEQARQQRWQLMGNQSISDALAQLRQQSQVLEQDVQQSQQQWQ
HAQSQASRLNGEITSLEQQEQHIENQLQQAISAFTAALSAAGFADETTFGHALLNETERT
QLLALEERLKQRRQQVETLQQQADNALEQHMVSRPESMPDGVSQEDIRQLIISLGTMAKA
EVEHQGELQQQLASDQKQREKQRALLEAIARAELQCEDLSYLNQLIGSQKGDKFRRFAQG
LTLDHLVFLANRQLSRLHGRYLLQRKTSDTLELQVADTWQADAVRDTRTLSGGESFLVSL
SLALALSDLVSTKTRIDSLFLDEGFGTLDGETLDTALDVLDNLNASGKTIGVISHVEAMK
DRIQVQIRVKKRNGLGISQLDNVYAVK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagtttgcggctgaaaaacctcaactccctgcaaggcgaatggaaaatc
gatttcacgcgcgagccttttgccagcaacagtctgtttgccattaccggcccaaccggt
gccggaaagacaacattgctcgatgccatctgtctggcgctctaccaccaaacgccgcgc
ctgaaagtgagccccggccagaatgaactgatgacccgccataccgcggattgtctggcc
gaggtggagttcgaagtaaaaaacgtggcctatcgcgccttctggagccaacggcgggcg
cacaacagcccggacggtaacctgcaaccgcccaaagtcgaactggcgctgtgtgccgag
ggtaaaatcctcaccgacaaagtgaatgataagctggcgatgatcgatgacatcaccggc
ctcgatttcgaccgtttcaccaaatcaatgatgctgtcgcaagggcagtttgctgccttt
ctcaacgccgatgctaaccagcgcgccgaattgcttgaagagctgaccggcacagatatc
tatggccacatttcagaacgggtgtttgagaaacacaagcaagcccacatccagctcgac
acgctcaaagccaaaatcgccacgctggaattactcagtgatgaacaacgtcattcactt
gagcagcaactggatttcattcgccagcaagaacactcgttgtcactgcaacgcgaagaa
atcatgacccatcaacgctggcatgacaccctgttgcaacaccagcaggcacagcgtcag
gcaaaacagcaacgcgatgcgtttgaacagttacagcgccagtcacaaacccaaatcgag
aaattgcgccgcagcgaaccggcagaaaaattacgcccgcaactcaacgaacgtgaccgg
gcgcaaaaagaaaaacagcgcctgcaagcacagttaacgctgttgcgacagcagcttggc
cgccagcaagatgcgtttagcttgctgaaaattcaattagaaaaagcgctaatcgtgcgc
aagcagcatgcagaacagcgccagcaacaggagacgctcatcagtgagcgcatccagcca
ctcgatcatcaaatctcaacactgcaaacccaacgaacccagcaacagcaggcgcttgac
agcctgcttgagcagcaaaaaacactgattgccgcgctctccagagtgcaacgtcagcgc
gagcaaacccagcaacagctcgcggaagtggaaaactaccgccagcaatatagcagccat
cagtttctcggcagccacattccactctggcaggctcagtttccccagcagcaaaaatgg
cagcaggacttacaggtctggcaggaaaaagccgcacagcagcagattcagtcagagtat
cttgaacagcagtgtgcttccctgacagaaaaacacctcgcccagcaaaaagcctgcgag
cgcgcgcagctattactgaatgaacaccagcagcaatacacgcagcaggaagccagtcaa
ccgctggaagcattgcgccaacagctggaatctcacgttgcccagcagtccgatcgccag
cagctagccacgcacagcgccgtgctgcaacagttactgagccagcgcacctcgcttgag
gcacagtatctcgatacccagcggcgcattgcggcgcttgagcaacagcaaacgcagttg
cggcagtcacatcaacgccaggcggagcatttggccgatctggaaaaacggcatgaatta
gaactgcgcattgtcagtctggaaaatgagcggcaacaattgcaaccgggtaaagagtgc
ccgttgtgcggcgcaacgcatcatcctgccgtggcgcgttatcaagcattgcggcccagt
gaaacccagatacggttacacgcgctacgtcaggaggtcgaaacgctgcaagcaagcgtg
gtacaagcgaccacacaattgcagttacaggagcaacagcgcgaacaacagcacaatgcc
atccagcgtgtgcaacatgattttgatgtcctgctgcaacagtgtcagattgttagtaaa
cgcttactgattgattttgacccgctacagagcgtcaccctgaatcagtggctggaagaa
gccagcaccaaagagcagacgctacaatcgcacatcgccagccgtgagcgcagtttgcgt
cagattcaggaaagtaaggatttactgacctccgccgagaaactgcgattacatacccaa
caacaactggcactcaatgcccagcagcgggagtcactgcaactggcacgcgatgagttg
cgccagtcactggagaaaacgcagcgtgagttacagcgcctgcatgatagcctgagccag
acgctggccatctttcagttacaggcaccggcactggcgcaacaggaagactggctgcgc
caacgccagacagagtggctacgctggcaagaaagtgagcttgagcaacatcgctgccag
ccacaactggcagcgcaggaagctgaaatcaccgccagccagcagcgtttatcggatatt
gaaaccgccctgaatgttggccagcagcaattggctgataccctgggcacgcttgagcag
gcacgccagcaacgctggcaactgatgggcaaccagagcatcagcgatgcgctggcccaa
ctgcgccagcaaagccaggtgctggagcaggatgtacagcaatcacagcagcagtggcaa
cacgcacagtctcaagccagccgcctgaatggagaaattacctcgctggagcaacaagaa
cagcacatcgagaaccagttacaacaggcgataagcgcattcaccgccgcactcagtgcc
gcaggatttgccgatgaaaccacctttggtcacgccttactcaatgagacagaacgcacg
caacttctggcgcttgaagagcggctcaaacagcgccgtcagcaggtagagacgttacag
caacaggctgataatgcactggaacagcacatggtttctcgccctgagtcaatgccggac
ggcgtcagccaggaggatatccgtcaattgatcatcagccttggcaccatggcaaaagcc
gaagtcgagcatcagggcgagttgcagcaacaactggctagtgaccaaaaacagcgcgag
aagcagcgcgcactgcttgaagccattgcccgtgcagagctgcaatgtgaagacttaagc
tacctcaatcagctaattggctcacaaaaaggtgacaaattccgccgctttgctcagggg
ctcacgctggatcacctggtgtttttagcgaaccgccagttgtcgaggctgcatggccgt
tacctgctacaacgaaaaacctcagacacgctggagttgcaggtggcggatacctggcag
gctgatgccgtgcgtgatacccgtactctgtctggtggtgaaagctttctggtgagcctg
tctttggcgctggcgctctctgatctggtgagtaccaaaacccgcattgattcgctcttt
cttgatgagggcttcggtacgctggatggtgaaacgctggataccgcactggatgtcctg
gataacctgaatgcctcagggaaaaccattggggttatcagccatgtggaggcgatgaaa
gaccgtatccaggtacaaattcgcgtcaaaaaacgcaacggccttggcattagccagctt
gataatgtgtatgccgtaaaatag
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