Dickeya aquatica: DAQ1742_04113
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Entry
DAQ1742_04113 CDS
T06021
Symbol
pelC
Name
(GenBank) Pectate lyase C precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
daq
Dickeya aquatica
Pathway
daq00040
Pentose and glucuronate interconversions
daq01100
Metabolic pathways
daq02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
DAQ1742_04113 (pelC)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DAQ1742_04113 (pelC)
Enzymes [BR:
daq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
DAQ1742_04113 (pelC)
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
SLM64880
UniProt:
A0A375AFL9
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Position
4100180..4101310
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AA seq
376 aa
AA seq
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MKALVAPIAAGLLLALSHASLAADTGGYTKTDGGDVAGAVKKTAASMQDIVKIIDDAKLD
ANGKKVKGGAYPLIITYTGNEDSLINAAAADICSQSAKDARGVEIKDFTKGITIIGANGS
SANFGIWIVNSENVVVRNMRIGYLPGGAQDGDMFRIDNSPNVWLDHNELFAANHECDGTK
DGDTTFESAFDIKKGATYVTISYNYIHGVKKVGLAGFSATDSAERNITYHHNIYSDVNAR
LPLQRGGNVHTYNNLYTKITSSGINVRQNGKALIENNWFENAVDPVTSRYDGSNFGTWVL
KGNNITKPADFATYNITWDADTKAYKNADAWTSTGTYPTVPYSYSPVSAQCVKDKLASYA
GVGKNLATLTAAACGK
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattagttgccccgattgccgcaggtttactgctggcactgagccacgccagt
ctggctgcggatactggtggttataccaagacagacggcggtgatgtcgccggtgcggtg
aagaagaccgccgcttcgatgcaggacattgtaaaaattatcgatgacgccaaacttgac
gctaacggtaagaaagtgaaaggcggtgcctacccgctgattattacttataccggcaat
gaagacagcctgatcaacgcggcggctgccgatatctgtagtcaatccgccaaagacgcc
cgtggcgtggaaatcaaagatttcaccaaaggcatcaccatcattggtgctaacggctca
tctgccaactttggtatctggattgtgaactctgagaatgtggtcgttcgtaacatgcgt
atcggctacctgccgggtggcgcacaagacggcgacatgttccgtatcgacaactcgccg
aacgtctggcttgatcacaacgaactgtttgccgccaaccacgagtgtgatggtaccaaa
gatggcgataccacctttgagtctgcctttgatatcaaaaaaggcgcgacttacgtcacc
atctcttataactacattcacggtgtgaagaaagtcggtctggcaggcttcagcgccacc
gatagcgctgaacgcaacatcacttatcatcacaacatctacagcgacgtgaatgcccgt
ctgccgttacaacgcggtggtaacgttcatacctataacaacctgtacaccaaaatcacc
agctctggcatcaacgtgcgtcagaacggtaaagcgctgatcgaaaacaactggtttgaa
aacgccgttgacccggtcacatcccgttacgatggcagcaacttcggcacctgggtactc
aaaggcaacaacatcaccaaaccggctgattttgctacctataacattacctgggatgca
gacaccaaagcgtataaaaacgccgatgcctggacatctaccgggacgtatccaaccgta
ccttatagctacagcccggtcagcgcccagtgtgtgaaagacaaactggctagctacgcc
ggtgttggcaaaaacctggccacactgaccgccgccgcgtgcggtaaataa
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