Dickeya aquatica: DAQ1742_04247
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Entry
DAQ1742_04247 CDS
T06021
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
daq
Dickeya aquatica
Pathway
daq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAQ1742_04247 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daq03021
]
DAQ1742_04247 (rho)
03019 Messenger RNA biogenesis [BR:
daq03019
]
DAQ1742_04247 (rho)
Transcription machinery [BR:
daq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DAQ1742_04247 (rho)
Messenger RNA biogenesis [BR:
daq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DAQ1742_04247 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
SLM65004
UniProt:
A0A375AFY7
LinkDB
All DBs
Position
complement(4238539..4239798)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtatctgaattgattactcttggcgaaaat
atggggctggagaatctggctcgcatgcgtaaacaggatattattttcgctatccttaag
cagcacgcgaaaagtggtgaagatatctttggcgatggcgtactggaaatattgcaggat
ggttttggattcctccgctccgcagacagttcctacctcgccggccctgatgacatctac
gtttccccaagccaaatccgacgctttaacctccgcactggtgataccatttccggtaag
atccgcccgccaaaagagggtgaacgttattttgcgctgttgaaagttaacgaagttaac
tatgacaaaccggaaaatgcccgcagcaagattctgtttgaaaacctgacgccgctgcat
gccaattcacgtttgcgcatggaacggggtaacggttcaaccgaagacttgacggctcgt
gtgctggatttggcttcaccgattggccgtggccagcgtggtctgattgtggcaccgccg
aaagccggtaaaaccatgttgctgcaaaatatcgcccagagcattgcctataatcacccc
gattgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtgacggaaatgcag
cgtctggtgaaaggcgaagtcgtcgcatcaacctttgacgagccagcctctcgccatgtg
caggtggctgaaatggtgattgagaaggccaaacgcctggttgagcacaagaaagacgtt
atcattctgctcgactccattacccgtctggcgcgtgcctacaacaccgtggtgccggct
tccggcaaggtgctgaccggtggtgtggatgctaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcgcgtaacgttgaggaaggcggtagcctgactatcatcgccacggcgctt
atcgacaccggttcgaagatggacgaagtgatttacgaagagttcaaaggcaccggtaac
atggaattgcacctgtctcgcaagattgccgagaagcgtgtgttcccggcgattgattac
aaccgctccggtacgcgtaaagaagagctgctcactacgtctgaagaactacagaagatg
tggatcttgcgcaaaatcattcatccgatgggtgagattgatgcgatggagttccttatc
aacaaactggcgatgaccaaaaccaatgatgagttcttcgatatgatgaagcgctcataa
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