Dokdonella aquatica: ACQQ2N_03990
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Entry
ACQQ2N_03990 CDS
T12004
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
daqt Dokdonella aquatica
Pathway
daqt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daqt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACQQ2N_03990 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daqt03021
]
ACQQ2N_03990 (rho)
03019 Messenger RNA biogenesis [BR:
daqt03019
]
ACQQ2N_03990 (rho)
Transcription machinery [BR:
daqt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACQQ2N_03990 (rho)
Messenger RNA biogenesis [BR:
daqt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACQQ2N_03990 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_22
Ourmia_CP
DUF3086
eIF-3_zeta
Motif
Other DBs
NCBI-ProteinID:
XYU85312
LinkDB
All DBs
Position
906830..908551
Genome browser
AA seq
573 aa
AA seq
DB search
MSDIENPEGGEGATPPAREPRQRQRAPRPPRDAQATPPQPSPDQQQLDYQPPAEYVAPQN
NADSQAPSGGQNEPRDNAQQHQGGGQQRHGGQQGHQGGQGGHQQGNNNNGQRNNRRDRDR
DRRGNRNPQNNQHRGLPQVDEEWDESRETGPLIDLNELKRKNALDLLALAETLGIQEGVA
RARKQDVIFNILKAHARAGGGIYGEGVLEILQDGFGFLRGPDQSFLAGPDDIYVSPSQIR
RFNLRTGDYITGRIRPPKEGERYFALLKVDHINGEPPEASKNKALFENLTALFPRKSFRL
ERGNGSTEDITGRILDLVAPIGRGQRGLIVSQPKAGKTMMMQNVAQAIVHNHPDVHLIIL
LIDERPEEVTEMQRGVRAEVISSTFDEPATRHVQVAEMVIERAKRLVEHKKDVVILLDSI
TRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALVETGSKM
DEVIYEEFKGTGNMEVHLSRRIAEKRVYPAIDINRSGTRREELLIEPDMLQKIWILRKLL
HPMDELAAMEFMLDKMKNTKSNDEFFNSMKRGG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgatatcgaaaatccagaaggtggcgaaggcgccacgccgcccgcgcgcgaaccg
cgtcagcgccagcgtgccccgcgcccgccgcgcgatgcccaggcgaccccgccgcagccg
agtcccgaccagcagcagctcgactaccagccgccggccgagtacgtcgcgccgcagaac
aacgccgattcgcaggcgccctcgggcggccagaacgagccgcgcgacaacgcacagcag
caccagggcggcggccagcagcgccacggcggccagcaaggccaccagggtggtcagggc
ggccaccagcagggcaacaacaacaacggccagcgcaacaaccggcgcgaccgtgaccgc
gaccgccgcggcaaccgcaacccgcagaacaaccagcaccgcggcctgccccaggtcgac
gaggagtgggacgagtcccgcgaaaccgggccgctgatcgacctcaacgagctcaagcgc
aagaacgcgctcgacctgctcgcgctggccgagacgctcggcatccaggaaggcgtcgcg
cgtgcacgcaagcaggatgtgatcttcaacatcctcaaggcgcacgcccgcgccggcggc
ggcatctacggcgaaggcgtgctcgagatcctgcaggacggcttcggcttcctgcgcggc
cccgaccagtcgttcctcgccggcccggacgacatctacgtgtcgccgtcgcagatccgc
cgcttcaacctgcgcaccggcgactacatcaccggacgcatccgtcctccgaaggaaggc
gagcgctacttcgcgctgctcaaggtcgaccacatcaacggcgagccgccggaagcgtcg
aagaacaaggcgctgttcgagaacctcaccgcgctgttcccgcgcaagtcgttccgcctc
gagcgcggcaacggctccaccgaggacatcacgggccgtatcctcgacctcgtcgcgccg
atcggccgcggccagcgcggcctcatcgtctcgcagcccaaggccggcaagacgatgatg
atgcagaacgtcgcgcaggcgatcgtgcacaaccacccggacgtgcacctgatcatcctg
ctcatcgacgagcgtcccgaggaggtgaccgagatgcagcgcggcgtgcgcgccgaggtc
atcagctcgacgttcgacgagccggcgacgcgccacgtgcaggtcgccgagatggtgatc
gagcgcgccaagcgcctcgtcgagcacaagaaggacgtggtcatcctgctcgactcgatc
acgcgcctcgcgcgcgcctacaacaccgtcgtgccgtcgtcgggcaaggtgctcacgggc
ggcgtcgacgcgaacgcgctgcagcgtccgaagcgcttcttcggcgcggctcgcaacctc
gaggaaggcggctcgctgaccatcatcgccaccgcactcgtcgagacgggttcgaagatg
gacgaggtgatctacgaggaattcaagggcaccggcaacatggaagtgcacctgagccgc
cgcatcgccgagaagcgcgtctacccggccatcgacatcaaccgctcgggcacgcgccgc
gaggaactgctgatcgagccggacatgctgcagaagatctggatcctgcggaagctgctg
catccgatggacgaactcgccgcgatggagttcatgctcgacaagatgaagaacaccaag
tccaacgacgagttcttcaattcgatgaagcgcggcggctga
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