Dokdonella aquatica: ACQQ2N_11360
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Entry
ACQQ2N_11360 CDS
T12004
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
daqt Dokdonella aquatica
Pathway
daqt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
daqt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACQQ2N_11360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daqt03021
]
ACQQ2N_11360 (rpoB)
03400 DNA repair and recombination proteins [BR:
daqt03400
]
ACQQ2N_11360 (rpoB)
Enzymes [BR:
daqt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACQQ2N_11360 (rpoB)
Transcription machinery [BR:
daqt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACQQ2N_11360 (rpoB)
DNA repair and recombination proteins [BR:
daqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACQQ2N_11360 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
XYU82652
LinkDB
All DBs
Position
2565243..2569397
Genome browser
AA seq
1384 aa
AA seq
DB search
MTYSFTEKKRIRKDFGKRPPVLDVPFLLAIQVDSYREFLQLDGDPNQREDKGLHAALKSV
FPISSYSGNAALEYVSYRLGEPAFDERECRSRGMSYGAPLRVTVRLVIYDRESSVKAIKY
VKEQEVYMGELPLMTDTGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDALFTRIDRRRKLPVTILLRALGYTNEQMLNIFFEHNVFHLGKKD
GAELELVAERLRGETLNFDLKVGDEVIVETAKRITARHVRRLESAGIKSLEVPDEYLVGR
ILAHDIVDAKTGELLAAANTEIADAHLEAFRKAGVDKIATLWVNDLDRGDYISKTLRIDP
TKSPLEALVEIYRMMRPGEPPTKDAAQNLFQNLFFSAERYDLDRVGRMKFNRRVGRKEDV
GPGILFDGRYFGDRNDENSKSLVREFADGSDILDVLKVLIEIRNGRGTVDDIDHLGNRRV
RSVGEMAENVFRIGLVRVERAVKERLSLAESEGLTPQELINAKPVAAAIKEFFGSSQLSQ
FMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLIN
SLAVYARTNEYGFLETPYRRVVNGKITNDVEFLSAIDEGDHVIAQANSPLKKDGSFVEEF
VSCRSHGESELRPASNIEYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTL
RAQTPVVGTGIERAVARDSGVIVAARRGGEIDQVDAARIVVRVNESEIGENDAGVDIYPL
TKYTRSNQNTNLNQRPLVKVGDKVEIGDVLADGPSTDLGELALGQNMLVAFMPWNGYNFE
DSILISERVVQEDRYTTIHIEELTCVARDTKLGPEEITADIPNVGEQALARLDESGVVYI
GAEVKAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVTV
FTRDGIEKDKRARQIEEMEIKRIKKDFDDQFRILEGAIFARLRTSIVGKVANGGPGGFKK
GELTDDYLDGLKKDEWFSIRMKDEDAADFLERAQEQIKGHREEFDRRFKEKQAKITAGDD
LAPGVLKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSMIVPVEDMPYAADGRPVDIVLNPL
GVPSRMNIGQILETHLGWAAKGLGEKIGKMLDANEKVGEIRKFLDAIYNHDKDAFKQRVD
LKSFTDDELLGMARNLRHGVPMATPVFDGAFESEIKAMLKLADLPESGQTKLIDGRTGEA
FDRPVTVGYMHVLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLQEMLTVKSDDVSGRNQMYKNIVDGDHEMVAGMPESFNVLVKEIRSLAINIELE
ESKK
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacctactcgttcactgaaaagaagcgcatccgcaaggatttcggcaagcgtccgccg
gttctggacgtcccgttcctgctcgccatccaggtcgactcgtatcgcgagttcctgcag
ctggacggtgatcccaaccagcgcgaggacaaggggttgcacgcggcgctcaaatcggtc
ttcccgatctcgagctactccggcaatgccgcgctcgagtacgtgagctaccgcctcggc
gagcccgccttcgacgagcgcgagtgccgttcgcgcggcatgtcgtacggtgcgccgctg
cgcgtgaccgtgcgcctggtcatctacgaccgcgagtcgtcggtcaaggcgatcaagtac
gtcaaggagcaggaggtctacatgggcgaactgccgctcatgaccgacaccggcaccttc
atcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcatcgttcgccgggcgtgttc
ttcgaccacgaccgcggcaagacgcactcctcgggcaagctgctctacagcgcgcgcgtg
atcccctaccgtggctcgtggctcgatttcgagttcgacccgaaggacgcgctgttcacg
cgcatcgaccgtcgccgcaagctgccggtgacgatcctgctgcgcgcgctcggctacacc
aacgagcagatgctcaacatcttcttcgagcacaacgtcttccatctgggcaagaaggac
ggtgccgagctcgagctcgtggccgagcgcctgcgtggcgaaacgctgaacttcgacctc
aaggtcggtgacgaggtcatcgtcgagaccgccaagcgcatcacggcgcgccacgtgcgc
cgcctcgagagcgcgggcatcaagtcgcttgaagtgccggacgagtacctggtcggccgc
atcctcgcgcacgacatcgtcgacgcgaagaccggcgagctgctcgccgcggccaacacc
gagatcgccgacgcgcacctcgaagccttccgcaaggccggcgtcgacaagatcgccacg
ctgtgggtcaacgacctcgaccgcggtgactacatctccaagacgctgcgcatcgatccg
accaagtcgccgctcgaggcgctggtcgagatctaccgcatgatgcgtccgggcgagccg
ccgaccaaggacgccgcgcagaacctgttccagaacctgttcttctcggccgagcgctac
gacctcgatcgcgtcggtcgcatgaagttcaaccgccgcgtcggccgcaaggaagacgtg
ggcccgggcatcctgttcgacggccgctacttcggcgaccgcaacgacgagaactccaag
tcgctcgtgcgcgagttcgcggacggctcggacatcctcgacgtgctcaaggtgctcatc
gagatccgcaacggccgcggcacggtcgacgacatcgaccacctcggcaaccgccgcgtg
cgttcggtcggcgagatggccgagaacgtgttccgcatcggcctcgtgcgcgtcgagcgc
gcggtcaaggagcgcctgtcgctggccgagtcggagggcctgaccccgcaggagctgatc
aacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcgcagctgtcgcag
ttcatggaccagaacaacccgctctcggaagtcacgcacaagcgtcgcgtctcggccctc
ggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcacccgacc
cattacggccgcgtctgcacgatcgagacgccggaaggcccgaacatcggcctgatcaac
tcgctcgcggtctacgcgcgcaccaacgagtacggcttcctcgagacgccgtaccgccgc
gtcgtgaacggcaagatcaccaacgacgtcgagttcctctcggcgatcgacgaaggtgac
cacgtcatcgcgcaggcgaactcgccgctcaagaaggacggcagcttcgtcgaggagttc
gtgtcctgccgttcgcacggcgagtccgagctgcgtccggccagcaacatcgagtacatg
gacgtctcgccgatgcagaccgtgtcggtcgcggccgcgctcgtgccgttcctcgagcac
gacgacgcgaaccgcgcgctcatgggcgccaacatgcagcgccaggcggtgccgacgctg
cgtgcgcagaccccggtggtcggcacgggcatcgagcgcgccgtggcgcgcgactcgggc
gtgatcgtggccgcgcgccgcggcggcgagatcgaccaggtcgacgccgcgcgcatcgtc
gtgcgcgtcaacgagagcgagatcggcgagaacgatgccggcgtcgacatctacccgctg
accaagtacacgcgctccaaccagaacaccaacctcaaccagcgtccgctcgtgaaggtc
ggcgacaaggtcgagatcggcgacgtgctcgccgacggcccgtcgacggacctcggcgag
ctcgccctcggccagaacatgctcgtcgcgttcatgccgtggaacggctacaacttcgag
gactcgatcctcatctccgagcgcgtcgtccaggaagaccgctacacgacgatccacatc
gaggaactgacctgcgtcgcgcgcgacaccaagctcggtcccgaggagatcaccgccgac
atcccgaacgtcggcgagcaggcgctcgcgcgcctggacgagtccggcgtcgtctacatc
ggcgcagaggtgaaggcgggcgacatcctcgtcggcaaggtcacgccgaagggcgagagc
cagctcacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctcggacgtg
aaggacagctcgctgcgcgtgccgcccggcatggacggcaccgtcatcgacgtcaccgtg
ttcacgcgtgacggcatcgagaaggacaagcgtgcgcgccagatcgaagagatggagatc
aagcgcatcaagaaggacttcgacgaccagttccgcatcctcgaaggcgccatcttcgcg
cgactgcgcacctcgatcgtcggcaaggtcgccaacggcggccccggcggcttcaagaag
ggcgagctgaccgacgactacctcgacggcctcaagaaggacgagtggttctcgatccgc
atgaaggacgaggacgctgccgacttcctcgagcgcgcgcaggagcagatcaagggtcac
cgcgaggagttcgaccgccgcttcaaggagaagcaggccaagatcaccgccggcgacgac
ctcgccccgggcgtgctcaagatggtcaaggtctacctggccgtgaagcgccgcatccag
ccgggcgacaagatggccggccgccacggcaacaagggtgtcgtgtcgatgatcgtgccg
gtcgaggacatgccgtacgcggccgatggccgcccggtcgacatcgtgctcaacccgctc
ggcgtgccgtcgcgaatgaacatcggccagattctcgagacccacctcggctgggccgcg
aagggcctcggcgagaagatcggcaagatgctcgacgcgaacgagaaggtcggcgagatc
cgcaagttcctcgacgcgatctacaaccacgacaaggatgcgttcaagcagcgcgtggac
ctcaagtcgttcaccgacgacgagctgctcggcatggcgcgcaacctgcgccacggcgtg
ccgatggcgacgccggtgttcgacggtgcgttcgagtccgagatcaaggcgatgctcaag
ctcgccgacctcccggagtcgggccagaccaagctcatcgacggccgcacgggcgaggcg
ttcgaccgcccggttacggtcggctacatgcacgtgctcaagctcaaccacctcgtcgac
gacaagatgcacgcgcgttcgaccggtccgtactcgctcgtcacgcagcagccgctgggt
ggcaaggcgcagttcggcggccagcgcttcggcgagatggaagtctgggcactcgaggcg
tacggcgcggcctacacgctgcaggaaatgctgacggtcaagtccgacgacgtgtcgggc
cgcaaccagatgtacaagaacatcgtcgacggcgaccacgagatggtcgcgggcatgccc
gagtcgttcaatgtgctggtcaaggaaatccgctcgctggcgatcaacatcgagctcgaa
gagtccaagaagtga
DBGET
integrated database retrieval system
