Deinococcus aquaticus: M8445_09520
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Entry
M8445_09520 CDS
T08867
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
daqu
Deinococcus aquaticus
Brite
KEGG Orthology (KO) [BR:
daqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daqu03019
]
M8445_09520 (hrpB)
Enzymes [BR:
daqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M8445_09520 (hrpB)
Messenger RNA biogenesis [BR:
daqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M8445_09520 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
AAA_19
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WDA57601
LinkDB
All DBs
Position
1969931..1972426
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AA seq
831 aa
AA seq
DB search
MSSFVLPIAEVVPAVRGALAAHSLVVVQAPPGAGKSTGLPLELLGEPWLAGRGIVMLQPR
RVAARAVAARLAEGLGEEVGGTVGYRVRFDSRVSAATRLEVVTEGILTRRLQRDPELSGV
GLVILDEFHERSLNADLALALLREVQGALRDDLRVLVMSATLDPGLPGRLGAPLIESAGR
AFPVEVRYLPVDPVGRVEDLVARQVRLALEAEPGDVLAFLPGVREIRAAAGLLSDVDAAV
LPLYGDLPVREQARALRPDPGGRRKVVLATSIAETSLTIDGVRVVVDGGLSRTQAFDPAS
GLSRMVTGRVTRDAAAQRAGRAGRTAPGVAYRLWSERTQPLLPAARPPEVMEADLAPLTL
ELAQWGVPDPADLHWLDVPPARRVETARGVLRDLGALDAAGRMTPEGARLLDFPTHPRVA
HLLTAADDAALAADVAALLEERDPLPPGSGADLTDRVAALRAWRGGGRTPGDVTVLERVE
RLSRQWRTLLKVRPDDSAPDGFAVGALILRAYPERAALAREAVAGLGRGRFLLSGGQGAA
LPEGDGLAGVRALAVAHLDAAPMSAAQAEGRIFLAAPLDPAALDAGAAWVDSVRWDARTG
TLVAQRERRFGALVLESRPLRDLPAQARVAALAGAVREEGLHLLTFSAEAQALRDRAESV
RAWRPDETDWPDLSDAGLLDTLEDWLGPHLGAARSREDLGRLNLLPAMQALLPWPLPARL
DELAPTHLTVPTGTRVRLSYRPGEAPILAVKLQELFGLADTPSVNGGRTPVLLHLLSPAG
RPVQVTQDLRSFWNSSYFEVRKDLRGRYPKHPWPDDPWTHAPMKGTKKRGV
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
gtgagttctttcgtgttgccgattgcggaggtggtgcctgcggtgcgtggggcgctggcg
gcgcattcgttggttgtggtgcaggcgcctccgggggcggggaagagtacggggttgccg
ctcgagttgctgggtgagccgtggttggcggggcgtgggatcgtgatgcttcagccgcgg
cgggtggcggcgcgggcggtggcggcgcggctggcggaggggttgggggaggaggtcggc
gggacggtcgggtaccgggtgcggttcgattcgcgggtgtcggcggcgacgcggttggag
gtcgtgacggagggcatcctgacgcggcggcttcagcgggatccggagttgtcgggggtg
gggctggtgattctggatgagtttcacgagcggagcctgaacgcggatctggcgctggcg
ctcctgcgggaggtgcagggggcgctgcgggatgacctgcgggtgctggtgatgagtgcc
acgctggacccgggtttgccggggcggctgggggcgccgctgatcgagagtgcggggcgg
gcgttcccggtcgaggtgcggtacctgccggtagacccggtggggcgcgtggaggacctt
gtggcgcggcaggtgcggttggcattggaggcggagccgggggacgtgctggcgttcctg
ccgggcgtgcgggagatccgcgcggcggccgggttgctgtcggacgtggacgcggccgtg
ctgccgctgtacggggacctgccggttcgggagcaggcgcgggcgctgcggcccgatccg
ggtgggcggcgcaaggtggtgctggcgaccagcatcgcggagacctcgctgaccatcgac
ggggtgcgggtggtcgtggacggcggcctgagccgcacgcaggcgttcgatccggccagt
gggctgtcgcggatggtgacgggccgggtcacgcgggacgcggcggcgcagcgggcgggc
cgcgcgggacgcaccgcgccgggcgtagcgtaccgcctgtggagtgagcggacgcagccg
ctgctaccggccgcgcgcccgccggaagtcatggaggcggacctcgcgccgctgacgctg
gaactcgcgcagtggggcgtgcccgacccggcggacctgcactggctggacgtgcccccg
gcgcggcgcgtggagacggcgcggggcgtgctgcgggacctgggcgcgctggacgcggcg
gggcgcatgacgccggagggcgcgcggctgctggacttcccgacgcacccgcgcgtggcg
cacctgctgacggcggcggacgacgcggcgctggcggcggacgtggcggccctgctggag
gaacgcgacccgctgccgccggggtccggggcggacttgacggaccgcgtggcggccctg
cgtgcgtggcgtggcggtgggcgcacgcccggcgacgtgacggtgctggagcgggtcgag
cggctgtcccggcagtggcgcaccctcctgaaggtccggccggacgactcggccccggac
gggttcgcggtgggcgcgttgatcctgcgggcgtacccggaacgcgccgcgctcgcccgc
gaggccgtggccgggctgggccggggacggttcctgctgtcgggcgggcagggggcggcc
ctgccggaaggggacggtctggcgggcgtgcgggcgctggcggtcgcgcacctggacgcc
gcccccatgagtgccgcgcaggccgaggggcggatcttcctggcggccccgctggacccg
gccgcgctggacgccggggccgcgtgggtggactcggtgcgctgggacgcccgcaccggc
acgctggtcgcgcagcgcgagcggcgcttcggggcgctggtcctcgaatctcgccccttg
cgggacctgccggcccaggcgcgggtcgcggcgctggccggagcggtccgtgaggagggc
ctgcacctgctgaccttcagcgccgaggcgcaggcactgcgggaccgcgccgagtctgtc
cgggcgtggcggccggacgagaccgactggccggacctcagtgacgccggcctgctggac
acgctggaggactggctgggaccgcacctgggcgcggcccgctcgcgggaggacctgggc
cgcctgaacctgctgccggccatgcaggcgctgctgccgtggcccctcccggcccggctg
gacgaactggcccccacgcacctgaccgtcccgaccggcacgcgcgtgcgcctgagctac
cggcccggcgaggcgcccatcctggccgtgaagttgcaggaactgttcgggctggccgac
acgcccagcgtgaatggaggccgcacgcccgtgctgctgcacctgctgtccccggcgggg
cggcccgtgcaggtcacgcaggacctccgctcattctggaactcctcttacttcgaggtg
cgtaaggacctgcgcggccgttaccccaagcacccctggcccgacgatccctggacgcac
gcccccatgaaaggcaccaagaaacggggcgtgtag
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