Deinococcus aquaticus: M8445_13040
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Entry
M8445_13040 CDS
T08867
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
daqu
Deinococcus aquaticus
Pathway
daqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M8445_13040 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daqu03021
]
M8445_13040 (rho)
03019 Messenger RNA biogenesis [BR:
daqu03019
]
M8445_13040 (rho)
Transcription machinery [BR:
daqu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M8445_13040 (rho)
Messenger RNA biogenesis [BR:
daqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M8445_13040 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
AAA_22
NACHT
ATPase_2
Spore_III_AA
AAA
AAA_24
MMR_HSR1
nSTAND_NTPase5
FeoB_N
Motif
Other DBs
NCBI-ProteinID:
WDA58260
UniProt:
A0ABY7UZE7
LinkDB
All DBs
Position
complement(2688490..2689767)
Genome browser
AA seq
425 aa
AA seq
DB search
MSDPTRAGLPFHELQQKILPELHLIAAGYGIENYRKLKKDTLALAIMEHQADAEGQLLAR
GFLEISADGYGFLQADLLDPNSRTVIITAGLIKQFHLRTGDEIIGRARKPRENERFGSLV
QVEAVNGLDPETARRRPRFDDLTPTFPEVQLVMEDPSMDDGLSLRVVDLLVPIGRGQRAL
IVAPPKAGKTTLLKKIANSIVKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIASTFDE
PPQHHVRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNAL
HWPKRFLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRI
FPALDILKSGTRREELLLQPEVLKKMWLLRKVISDMDPADAMEMLLSRMGKTRNNVEFLQ
GLAGG
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaccccacccgcgccggcctgccctttcacgaacttcaacagaagatcctgccc
gaactgcacctgattgccgccgggtacggcatcgagaactaccgcaaactgaaaaaagac
accctggcgctggccatcatggagcaccaggcggacgccgaggggcaactgctggcccgc
gggttcctggaaatcagtgccgacgggtacggcttcctgcaggccgacctgctcgacccc
aacagccgcactgtgatcatcacggccggcctgatcaagcagtttcacctgcgcaccggt
gacgagatcatcggccgggcccgcaagccccgcgagaacgaacgcttcgggtcgctggtg
caggtggaagccgtcaacggcctggaccccgaaacggcccggcgccgcccgcgcttcgac
gacctgacccccaccttccccgaggtgcaactggtcatggaagaccccagcatggacgac
ggcctgagcctgcgcgtcgtggacctgctggtgcccatcgggcggggccagcgcgccctg
atcgtcgcgccgcccaaggccgggaagaccaccctgctgaagaagatcgcgaactccatc
gtcaagaactacccggacgtgaccgtgatggtcctgctggtcgacgagcgcccggaggaa
gtcacggacttccgcgagagcgtgcagggcgcgcaggtcatcgccagcaccttcgacgag
ccgccgcagcatcacgtgcgcgtcgcggagttcgtgcatgaacgcgcccgccgcatcgtg
gaagaaggcgggcacgtggtgatcctgctggattccatcacccgactggcccgcgcgaac
aacctcgtcacgccgcccaccggccgcaccctgtccggcggtctggacagcaacgcgctg
cactggcccaaacgcttcctgggcgcggcccgcaacatccgcgagggcggcagcctgacc
attctggccaccgcgctcgtcgagacgggcagccgcatggacgacgtgatcttcgaggaa
ttcaagggcaccggcaacgcggaactcgtgctgtcgcgccgcctcgaggaacgccgcatc
ttcccggcgctggacatcctgaagtccggcacgcgccgcgaggaactgctgctacaaccc
gaagtgctcaagaaaatgtggctgctgcgtaaggtcatcagcgatatggacccggcggac
gccatggaaatgctgctgtcccgcatgggtaaaacccggaacaacgtcgaattcctgcag
ggcctcgccggcggttga
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