Deinococcus aquaticus: M8445_13185
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Entry
M8445_13185 CDS
T08867
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
daqu
Deinococcus aquaticus
Pathway
daqu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
daqu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
M8445_13185 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daqu03021
]
M8445_13185 (rpoD)
Transcription machinery [BR:
daqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M8445_13185 (rpoD)
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Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
WDA58287
UniProt:
A0ABY7UZD6
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All DBs
Position
complement(2722488..2724245)
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AA seq
585 aa
AA seq
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MADSPTVRTRKKVEAPTDGAAPAPKPVRPRARVAAGTPVKDSAAPAADTAPMAAKAAPVK
EVPAKEAPVKAAAVKPVAASAPETAAPSAEAPAPKPARAARATAKPKAPAADADAAPAEP
KAAEPKAKAPAKPRAAAKPKKTDAAPAAPARTPGKVTSRAAKPAAKSAPAAGGVAEKPYY
SHASIQELLKGGRAAGVLASEDIATALAAALEANGLDPESPDAFEDMQLYLGSINIEVQD
LDEDEDDADADTDDSPVAAASASRQQEDDEEKYFDDMPRAVSNDPVRQYLHEIGRVPLLT
LEEEIALARRIEEGEEARKILDEDLELDDRGRRRLMRQMEDGAAARQGLIEANLRLVVSI
AKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYRRRYKFSTYATWWIRQAINRAIADQARTI
RIPVHMVETINKLTRTARQLQQELSREATYEEIAEAMGPGWDATKVEEVQKVSQEPVSLE
TPIGDEKDSFYGDFIPDENLDSPVENAAKTLLSEELEKALSKLTEREAMVLKFRKGLVDG
REHTLEEVGQRFSVTRERIRQIENKALRKLKYHESRTRKLRDFLD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcccccaccgtccgcacccgtaagaaagtcgaagcgcccaccgacggcgcc
gcgcccgcacccaagccggtgcgcccgcgcgcccgcgtggccgccggcacgcccgtcaag
gacagcgccgcccctgccgccgacactgcccccatggccgctaaagcagccccggtcaag
gaagtgcctgccaaggaagcgcccgtcaaggccgctgccgtgaaacccgtggcggccagc
gcccccgaaacggccgcgcccagcgccgaggctcccgcgccgaaaccggcccgcgccgct
cgcgccaccgcgaaacccaaggccccggccgccgacgccgacgctgctccggccgagccg
aaagccgccgaaccgaaggccaaggcgcccgccaagccccgcgcggccgccaaacccaag
aagaccgacgcggcccccgccgctccggcccgcacgcccggcaaggtcacctcgcgcgcc
gcgaaaccggccgcgaaatccgccccggccgccggtggcgtcgccgagaaaccgtactac
tcgcacgccagtattcaggaactcctgaagggcggccgcgccgccggggtgctggccagc
gaggacatcgccaccgccctggccgccgcgctggaagccaacggcctggaccccgaaagc
cccgacgccttcgaggacatgcagctgtacctggggtccatcaacatcgaggtgcaggac
ctcgatgaggacgaggacgacgcggacgccgacacggacgacagccccgtcgcggccgcc
tccgcctcgcgccagcaggaagacgacgaggagaagtacttcgacgacatgccccgcgca
gtcagcaacgaccccgtgcggcagtacctgcacgagatcggccgcgtgcccctgctgacc
cttgaggaggaaattgcgctggcccgccgcattgaggaaggcgaggaagcccgcaagatt
ctcgacgaggacctggaactcgacgaccgcggccgccgccgcctgatgcgccagatggaa
gacggcgccgccgcccgccagggcctgatcgaggccaacctgcgcctcgtggtctccatc
gccaagaagtacaccgggcgcggcctgggcttcctggatctgattcaggaaggcaaccag
ggcctgatccgcgcggtcgagaagttcgagtaccgccgccgctacaagttcagcacgtac
gccacgtggtggatccgtcaggccatcaaccgcgccatcgccgatcaggcgcgcaccatc
cgcatcccggtgcacatggtcgagacgatcaacaaactcacccgcaccgcccggcagctc
cagcaggaactgtcgcgcgaggcgacgtacgaggagatcgccgaggccatgggtcccggc
tgggacgccaccaaggtcgaggaagtgcagaaggtcagccaggaacccgtgtccctggaa
acccccatcggtgacgagaaggactccttctacggcgacttcattccggacgagaacctc
gacagcccggtcgagaacgccgccaagaccctcctgagtgaggaactggaaaaggcgctg
agcaaactcaccgagcgcgaggcgatggtcctgaagttccgcaagggcctcgtggacggc
cgcgagcacaccctggaggaggtcgggcagcgcttcagcgtgacccgcgaacgcatccgc
cagatcgagaacaaggcgctgcgcaagctgaagtaccacgagagccgtacccgcaagctc
cgcgacttcctggactga
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