Dechloromonas aromatica: Daro_0313
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Entry
Daro_0313 CDS
T00259
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dar
Dechloromonas aromatica
Pathway
dar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Daro_0313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dar03021
]
Daro_0313
03400 DNA repair and recombination proteins [BR:
dar03400
]
Daro_0313
Enzymes [BR:
dar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Daro_0313
Transcription machinery [BR:
dar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Daro_0313
DNA repair and recombination proteins [BR:
dar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Daro_0313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
DUF6342
Motif
Other DBs
NCBI-ProteinID:
AAZ45072
UniProt:
Q47JA9
LinkDB
All DBs
Position
356857..361068
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVTAEEEFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRDRMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMVSNLQRAQLLTEDQYLEMVEEHGDEFQAL
MGAEGIRELLRNLELDSEVESLHAELEVTGSEAKNKKLAKRLKILEGFQKSGIKPDWMIL
EVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
QLKLHQCGLPKLMALELFKPFIFHKLEVLGYATTIKQAKKMVEGQEPVVWDILEDVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLSPANGQPIIVPSQDIVLGLYYATREKINGKGEGMYFADTAEIERAMAA
GQLDVHSRISVRLKQYEPAAVDGEWEEKTVRVETTAGRALLAKILPKGLPFKAIDRALKK
KEISKLIDESFRRCGLKETVIFADKLMQNGYALATRAGISFCSDDMLVPAKKYEIISSAE
AEVKEIETQYTNGLVTQGERYNKVVDIWGRTGDQVAKVMMEELGHEEVIDRHGKKVKQDS
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTKNGFVVKALVEGGEVIEALRER
ILGRVTVDDLIDPETQETVIFAGTMLDEDLVDLIDKLGIDEVKVRTPLTCDTRYGLCAQC
YGRDLGRGTMVNAGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVADKVEGKSAGTV
RYTSNMRYVTSAKGEKVVISRSGEVLIVDDHGRERERHKVPYGAMLSVDEDKSVKAGAKL
ATWDPHTRPIITEYAGTVRFENVEEGVTVAKQVDDVTGLSTLVVIDHKRGGKAAVKGVRP
VVKLLDESGQEVRVHGSDHTVSIAFQVGSIISVVDGQQVGVGDVLARMPQESAKTRDITG
GLPRVAELFEARTPKDASVLAEVTGTISFGKDTKGKQRLVITDLEGNVHEFLISKDKHVL
VHDGQVVNKGEKIVEGEPDPHDILRLQGIEALARYITDEVQDVYRLQGVKINDKHIEVIV
RQMLRRVTIVEPGDTKFIKSEQVERAELLAENDRANAEGKIPATIEHMLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAFHRSRKAQLAGED
IAASRQIEEATAENTTQEADQGL
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctattcaagcaggtaaccgccgaggaagaattcgacgcgatt
accattggcctcgcttcgcccgacaagatccgttcctggtcctatggtgaagtcaagaag
ccggaaaccatcaactaccgcaccttcaagccggagcgtgatggcctgttctgtgccaaa
atctttggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggttcgtcgcgac
cgcatgggtcacatcgaactggcctcgccgaccgcccacatctggttcctgaagtcgctg
ccgtcccgtctcggcatggtgctcgacatgacgctgcgcgatatcgaacgcgtcctgtac
ttcgaagcatacgtcgtgaccgatccgggcatggtcagcaaccttcagcgcgctcagttg
ctgacggaagaccagtatctggaaatggtcgaagagcacggtgatgaattccaggccctg
atgggcgctgaaggtattcgcgaactgttgcgcaacctcgaactggatagcgaagtcgag
tctctgcacgctgaactcgaagtgaccggttctgaagccaagaacaagaagctggccaag
cgtctgaagatccttgaggggttccagaagtcgggcatcaagccggactggatgatcctc
gaagttctgccggttctgccgccggacctgcgtccgctggttccgctggatggcggccgc
tttgcgacctccgacctgaacgatctttatcgtcgtgtcatcaaccggaacaatcgcttg
aagcgcttgctcgagttgaaggctccggaaatcatcgtccgtaacgaaaagcgcatgctg
caggagtcggtcgattccctgcttgacaacggccgtcgcggcaaggcgatgaccggtgcc
aacaagcgtccgctgaagtcgctggctgacatgatcaagggcaagggcggtcgtttccgt
caaaacttgctgggtaagcgcgtcgactactccggccgttcggtcatcgtggttggtccg
cagctcaagctgcatcagtgcggcctgcccaagctgatggccctggagctgttcaagccc
ttcatcttccacaagctggaagtgctcggctacgccaccaccatcaagcaagccaagaag
atggtcgaaggtcaggaaccggtggtgtgggacatccttgaagatgtcatccgcgaacat
ccggtcatgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgaaccg
accctgatcgaaggcaaggccatccagctgcacccgctcgtttgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgttcacgtcccgctgtcgctcgaagcgcagatggaa
gcccgcaccctgatgctggcctccaataacgtgctgtcgccggctaacggccagccgatc
atcgtgccgtcgcaggatatcgtgttgggtctgtactatgcgacccgcgagaagatcaac
ggcaagggtgaaggcatgtactttgccgatactgccgaaatcgaacgcgccatggctgct
ggtcagctggatgtgcactcccgtatttcggtccgcctgaagcagtacgaaccggcggcc
gtcgatggcgaatgggaagagaagaccgttcgtgtcgaaaccacggccggtcgtgcgctg
ctcgccaagattctgccgaagggtctgcccttcaaggcaattgatcgtgccctgaagaag
aaggaaatctccaagctgatcgacgagtccttccgccgttgcggtctgaaggaaacagtc
atcttcgctgacaaactgatgcagaacggctacgcgctcgcaacgcgggccggtatttct
ttctgctcggacgacatgctggtgccggccaagaagtacgaaatcatttcctcagccgaa
gccgaggtcaaggaaatcgagacgcaatacacgaacggtctggttacccagggcgagcgt
tacaacaaggtcgttgatatctggggccgcaccggtgaccaggttgccaaggtgatgatg
gaagaactcggccacgaggaagtcatcgaccgccacggcaagaaggtcaagcaggactcc
ttcaactccatctacatgatggctgactcaggtgctcgcggttccgccgcacagattcgt
cagctggctggtatgcgcggtctgatggccaagccggacggctcgattatcgagaccccg
attaccaccaacttccgcgaaggcctgaacgttctccagtacttcatctcgacccacggc
gcccgtaagggtctggccgataccgcgctgaagaccgcaaactccggttacctgacccgt
cgtctggtcgatgtgacccaggatctggtgatcaccgaagatgactgcggcaccaagaac
ggcttcgttgtaaaggcgctggtcgaaggcggtgaagtgatcgaagcactgcgcgaacgt
attctgggtcgtgtcaccgttgatgacttgatcgatccggaaacccaggaaacggtcatc
ttcgctggcacgatgctggatgaagacctggttgatttgatcgacaagctgggtatcgat
gaagtcaaagtccgcacgccgctgacctgtgacacgcgctatggcctgtgcgcccagtgt
tatggccgtgatcttggccgtggcacgatggtcaacgccggtgaggcagtcggcgtgatc
gctgcccagtcgattggcgagccgggtactcagcttaccatgcgtaccttccacgtcggt
ggtgcggcttcccgtgctgccgtggctgacaaggtcgaaggcaagtcggctggtaccgtg
cgctatacctcgaacatgcgttatgtcaccagcgccaagggcgaaaaggttgtcatttcc
cgttctggcgaagtgcttatcgtcgacgatcatggtcgtgagcgcgaacgtcacaaggtg
ccgtacggcgccatgctgtcggtcgatgaagataaatcagtcaaggcaggtgccaagctg
gcaacctgggatccgcatacccgtccgatcattaccgaatacgcgggtaccgttcgcttc
gagaatgtcgaggaaggcgttaccgtcgccaagcaggtcgatgatgtgactggcttgtcc
acgctggtagttatcgaccacaagcgcggtggcaaggctgcggtcaagggtgttcgcccg
gtggtcaagctccttgatgagagcgggcaggaagtacgcgtgcacggcagtgatcacact
gtttcgatcgccttccaggttggctcgattatttctgtggtcgatggtcagcaggttggt
gtgggcgatgtgctggcccgtatgccgcaagagtctgccaagactcgcgacattaccggc
ggtctgccgcgcgttgccgaactgttcgaagctcgtacgccgaaggatgcatccgtgctg
gctgaagtcactggcacgatcagctttggtaaggacaccaagggcaagcagcgcctggtt
atcaccgatctcgaaggcaacgttcacgagttcctgatttccaaggacaagcatgttctg
gtgcacgatggccaggtggttaacaagggcgaaaagatcgtcgaaggcgaaccggatccg
cacgatattctgcgtctgcagggtatcgaagctctggcccgctacattaccgacgaagtc
caggacgtttaccgcttgcagggcgtgaagatcaacgacaagcacattgaagtgatcgtc
cgtcagatgctgcgtcgggtgaccattgttgaaccgggcgacaccaagttcatcaagtcc
gagcaggtcgaacgcgctgaactgctggctgagaatgatcgtgccaatgccgaagggaag
atcccggcaacaatcgaacacatgttgctcggtattaccaaggcatccttgtcgaccgat
tcgttcatctctgctgcatccttccaggaaaccactcgcgtactcaccgaggctgccatc
atgggcaagcgcgatgaattgcgtggtctcaaggaaaatgtcatcgtcggtcgtctcatt
ccggcgggtaccggtctggccttccatcggagccgcaaggctcagctggcaggtgaagat
atcgcggcctcccgtcagatcgaagaggcaactgccgaaaacacaacacaggaagccgat
cagggcctgtga
DBGET
integrated database retrieval system
