Dechloromonas aromatica: Daro_0546
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Entry
Daro_0546 CDS
T00259
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dar
Dechloromonas aromatica
Pathway
dar03420
Nucleotide excision repair
dar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Daro_0546
03430 Mismatch repair
Daro_0546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dar03400
]
Daro_0546
Enzymes [BR:
dar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Daro_0546
DNA repair and recombination proteins [BR:
dar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Daro_0546
MMR (mismatch excision repair)
Other MMR factors
Daro_0546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_12
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF8203
Motif
Other DBs
NCBI-ProteinID:
AAZ45303
UniProt:
Q47IM8
LinkDB
All DBs
Position
604793..606934
Genome browser
AA seq
713 aa
AA seq
DB search
MSDLLANLNSPQLQAVTLPPVHALILAGAGSGKTRVLTTRIAWLISTGQVGPHGVLAVTF
TNKAAKEMTARLSSLVPINVRGMWIGTFHGLCNRLLRAHFREAGLPQTFQILDSADQLAM
VKRLLKNLNIDDEKYPPRELCHFINAHKEQGVRAAQAEAYDNYTQKRVEIYAEYENQCNR
EGVCDFAELLLRCYELLQRNEPLRAHYQQRFRQILVDEFQDTNVLQYAWLKLLAGGGAHI
FAVGDDDQSIYRFRGAEVGNMREFERDYAGANVIRLEQNYRSHGNILAAANAIIKNNRER
LGKNLWTDAGDGEPIRAFEAYSDLDEARFIVEEIRELVRDGNSPTQIAILYRSNAQSRVL
EHELFTKGVPYKVYGGLRFFERQEIKHALAYLRLLGNQDDDTAFLRVVNFPTRGIGARSL
ENLQATAHQINSSLYNAAASLTGKAGQTVGAFVRLIETLRQETANLPLPEIIEHVVEKSG
LAQHYRVEKEGQERLENLDELINAAATFVDDEGAIGEGGALASFLAHASLEAGEHQAGEG
QEAVQLMSVHAAKGLEFDVVFISGLEQGLFPHENSVNEGKDGLEEERRLMYVAVTRARQR
LYVSCAQTRMLHGQTRYCVPSSFLDEIPEGLMRKLNKKAESATAVPAFGSFGGGYAEPAA
GGLRVGQTVEHAKFGVGVIVSTEGRGSDARVQVNFGGAGMKWLALEYAKLTPV
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctgctcgccaatctgaattccccccagttgcaggcggttaccctgccgccc
gtccatgcattgattctcgcgggggcagggagcggcaagactcgtgtgctgacgacgcgc
attgcgtggctgatttcgaccggacaggtcggcccgcatggggttctggcggtgaccttc
accaacaaggcggccaaggaaatgacggcgcgcctgtcttcgctggtgccgatcaatgtg
cgcggcatgtggatcggtaccttccacggcctgtgtaatcgcttgctgcgggcgcatttt
cgcgaggccggattgccccagaccttccagattctcgattcggctgaccaattggccatg
gtcaagcgcttgctgaagaacctgaatattgatgacgaaaaatatccgccgcgcgagttg
tgccatttcatcaacgcccataaggaacagggtgtgcgtgccgcacaggccgaggcttac
gacaactacacgcaaaagcgcgtcgagatctatgccgagtacgagaatcagtgcaatcgc
gagggggtgtgtgactttgccgaactgctgctgcgctgctacgaattgctgcagcgcaac
gaacctttgcgggcgcattatcagcagcgtttccggcagattctggtcgatgaattccag
gatacgaacgtgttgcagtacgcctggctgaaattgctcgctggcggtggggcgcatatc
tttgcggtgggcgacgacgaccagtcgatttaccgtttccggggcgccgaggtgggcaac
atgcgcgagttcgagcgtgactacgccggtgccaacgtgattcgcctggagcagaactac
cgctcgcacggcaacatcctggctgccgccaacgccatcatcaagaacaaccgcgagcgt
ctgggcaagaatctgtggaccgatgccggtgacggtgagccgatccgcgcgttcgaggcg
tattcggatctcgacgaagcgcgtttcattgtcgaggaaattcgcgaattggtccgcgat
ggcaattcgccgacgcaaattgccattctttaccgttcgaatgcccagtcgcgggtgctg
gagcacgaactgtttaccaagggtgtgccgtacaaggtctatggcggcctgcgcttcttc
gagcgccaggaaatcaagcatgcattggcctatctccgcctgttgggcaatcaggacgac
gacacggccttcctgcgcgtcgtcaatttcccgacgcgtggcatcggcgcccgttcgctg
gaaaacctgcaggccacggcgcaccagatcaattccagcctctataacgctgcggcatcc
ctgaccggcaaggcagggcagaccgtgggcgcgtttgtccgcctgatcgagaccttgcgt
caggaaacggccaatctgcccttgcccgagatcatcgaacatgtcgtcgaaaagtccgga
ctggcccagcattaccgggtcgagaaggaagggcaggagcgcctggaaaaccttgatgaa
ctgatcaatgccgccgccaccttcgttgacgacgaaggcgctattggcgaaggcggggcg
ctggcttccttcctggcgcatgcctcgctggaagcgggcgagcaccaggccggcgaaggg
caggaggcggtgcagctgatgtcggtgcatgccgccaagggcctggagttcgacgtggtg
ttcatcagcggcctcgaacagggcttgttcccgcacgagaactcggtcaatgagggcaag
gatgggctggaggaagagcgccggctgatgtacgtcgccgtgacgcgggcccgtcagcgg
ctttatgtgtcttgtgcgcagacccgcatgctgcatggccagacgcgctactgcgtgccg
tcgagcttccttgacgaaatcccggaaggcctgatgcgcaagctgaacaagaaggcagag
tcggccacggccgtgccggcctttggctcgttcggaggcggttacgccgagcctgccgcc
ggtggtttgcgggtcgggcagacggtcgagcatgccaaattcggtgtcggtgtgatcgtg
tctaccgaggggcgtgggagcgatgcgcgggttcaggtcaatttcggtggtgccggcatg
aaatggctggcgctggagtacgcgaaactgaccccggtgtga
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