Dechloromonas aromatica: Daro_1873
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Entry
Daro_1873 CDS
T00259
Name
(GenBank) Protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dar
Dechloromonas aromatica
Brite
KEGG Orthology (KO) [BR:
dar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dar03016
]
Daro_1873
Enzymes [BR:
dar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Daro_1873
Transfer RNA biogenesis [BR:
dar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Daro_1873
Prokaryotic type
tRNA splicing ligases
Daro_1873
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAZ46619
UniProt:
Q47EW2
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All DBs
Position
2013074..2014270
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AA seq
398 aa
AA seq
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MPIRQTLKTPNVPVKIWTDDVDDNSRQQLVNIASLPFIHHHVAAMPDVHLGIGATIGSVI
ATRQAIVPAAVGVDIGCGMVACRLSIGANALGEKALKKIFEQISRDVPVGKAQHEDDRAP
ALVARPFEPRLKVMTQRHPQLLKSFGKFSKWVNQLGTLGGGNHFIEVCLDESEQLWVMLH
SGSRGIGNALATYFIELARRDMERQQIHLPDRDLGYFKEGSAHFDDYVEAVHWAQEYAFA
NRECMMDLVLAALHRHLPEFSVTSEVVNCHHNYVAREHHYGADVWVTRKGAIRARAGDLG
IIPGSMGARSYIVRGKGNPESFDSSAHGAGRRMSRNAAARTFSEADLRRQTEGVVCRKDK
SVIDEIPGAYKDIDAVMDNQRDLTETLHTLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgcccattcgccaaacccttaagacgcccaacgtgccggtcaagatctggaccgatgat
gtcgatgacaactcacgccagcagctcgtcaacatcgccagcctgccgttcatccaccac
catgtggccgcgatgccagatgttcatctcggtattggcgcgaccattggttcggtgatc
gccacccggcaggcgatcgttcccgccgcagtcggcgtcgatatcggctgcggcatggtg
gcctgccggctgtcgatcggtgccaatgcgcttggcgaaaaggcgctgaagaaaattttc
gaacagattagtcgcgatgtgccggtcggcaaggcgcagcatgaggatgaccgggcgccg
gccctggtggcgcggcctttcgagccccgtcttaaagtcatgacacagaggcatccgcag
ctactcaagagcttcggaaaattctcgaaatgggttaatcaattgggcacccttggtggc
ggtaaccatttcatcgaggtttgtctcgatgaatccgagcagctctgggttatgttgcac
tcgggcagtcgcggcatcggcaatgcgctggccacttatttcattgaactggctcgccgc
gacatggagcgccagcagattcacttaccggaccgcgacctcggatatttcaaggagggc
agcgcccatttcgatgactatgtcgaggcagtccattgggcgcaggagtacgcatttgcc
aatcgcgaatgcatgatggatctggtgctggccgccttgcatcgccatctgcccgaattt
tcagtgaccagtgaagtggttaattgccatcacaattacgtggcccgcgagcatcactat
ggggccgatgtctgggtcacgcgcaagggggccatccgtgcccgggccggtgatctcggc
attattcccggcagcatgggtgcgcgcagctacattgtgcgcggcaagggtaacccggag
agcttcgattcgagcgcccatggtgcgggtcggcgaatgagccgcaatgccgccgcccgg
actttcagcgaggccgatctgcgccgacaaaccgagggcgtcgtttgccgaaaggataaa
agtgtcatcgacgagattcccggggcctacaaggacatcgatgcggtgatggataaccag
cgggacctgactgaaaccctgcataccctgaagcaggtggtgtgcgtcaaaggctag
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