Dechloromonas aromatica: Daro_2005
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Entry
Daro_2005 CDS
T00259
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dar
Dechloromonas aromatica
Pathway
dar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Daro_2005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dar03019
]
Daro_2005
03009 Ribosome biogenesis [BR:
dar03009
]
Daro_2005
Enzymes [BR:
dar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Daro_2005
Messenger RNA biogenesis [BR:
dar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Daro_2005
Ribosome biogenesis [BR:
dar03009
]
Prokaryotic type
rRNA processing factors
Daro_2005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAZ46751
UniProt:
Q47EI0
LinkDB
All DBs
Position
complement(2160082..2162694)
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AA seq
870 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDY
GADRHGFLPFKEVSRAFFQPGTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVS
LAGRYLVLMPNNPRGGGVSRRVDGDERAELRDVMDQLEVPNGMSLIARTAAIGRQAEELQ
WDLNYLLQLWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQAR
AFMGTVMPGNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAV
DVNSGRATKGSDIEETAFKTNQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENR
LRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSAESAALH
ILRILEEEAMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPA
HTITRLRHDDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPI
MPEKAEAPVAAPAQPEGGLFSKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRG
GRNGNRRDEERGERKERPERKERNAVDKAPQDGTPASNGERKERRPRGERKERGERQQQA
ETVENKLVQQTAAADAAVAPLLANEAPDAQGNEEQGNRRRGRRGGRGRGERRNEADSTPV
AEVLPVIEPAVEPINQEPVVVVIPAAEPVVVAAEVVTPVVEPVASPIVEPVQVAEVIEAA
PAAIIEALPVEIQESPKAEAPAPAPAPVVAEPVNLEATLAESGLVMVQTTSAAVAAAQPE
PPVKLGRPRKAKPASKQAESESLVMVETAK
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctattcaatgcgacacaggcggaagaactccgtgtcgccattgtcgat
ggtcaaaaactgattgacctcgacattgaatccgccgccaaggaacaacgtaaaagcaac
atctacaaaggggtcatcacccgcatcgaaccgtcgctcgaagcctgcttcgtcgactac
ggtgctgaccgacacggcttccttcccttcaaggaagtctcccgcgccttcttccagcca
ggcactgaagttggtcgcgcccggattcaggatgcgctgaaagaaggccaggaactgatc
atccaggtcgacaaggacgaacgtggcaacaagggtgccgccctaaccacctatgtctcg
ctagccggtcgctatcttgttctgatgccgaacaacccgcgcggcggtggtgtttcccgc
cgcgttgacggcgatgagcgcgctgaactgcgcgacgtcatggatcagctcgaagtaccc
aacggcatgagcctgatcgcccgcaccgcagccattggccgccaggccgaagagctgcag
tgggatttgaattacctgctgcaactgtggaccgccattgacggtgccgcccagcaacag
agcggcgctttcctgatttatctggaaggcagcctggttatccgcgcgattcgtgactat
ttccagcccgatatcggcgaaattctgatcgacaccgacgaagtctatgagcaggctcgc
gccttcatgggcacggtcatgccgggcaatatcaatcgcgtcaagcgctatcgcgatgat
gtgccactgttctcgcgcttccagatcgaacaccagatcgaaaccgccttcgctcgccag
gtcaacctgccgtccggtggcgccatcgttatcgatcacactgaagcgctggtcgccgtc
gacgtcaactccggtcgcgccaccaaaggttccgatatcgaagaaaccgcattcaagacg
aatcaggaagcagctgaagaactggcccgccagttgcgtctgcgcgacttgggcggcctg
atcgtgatcgacttcatcgacatggaaaaccagaagaaccagcgtgaagtcgaaaaccgc
ctgcgcgatgcactgcgtttcgaccgtgcccgagtccaaatgggcaagatcagccgcttc
ggcctgatggagctatcccgccagcgcctgcgtccggcgcttgccgaaaccagctacatc
ccctgcccgcgctgcaccggcaccggccacatccgctccgccgaatcggctgccttgcac
atcctgcgcatccttgaagaagaggcgatgaaggaaaataccggcgccgtgcatgtccaa
gttccggttgatgtcgccaccttcctgctcaacgaaaagcgcccggacatccaggccatc
gagttgcgtcataaggtcaccattctgttgattccgaatgttcatctcgaaacgccggcc
cacaccattacccgcctgcgccacgatgatctgaaccaagacgatcttcgcgagccatcc
tacaagatggtcgacatgccgatcgaggaagctatcaagcaggcaacccaggcggaagcc
gccaaacctcgtcaggaagctgcgatcaagggtatttcccctgatcagcccgcaccgatc
atgccggaaaaggccgaagcgccggttgccgcgcctgctcagccagaaggcggcttgttc
tcgaaaattttctcgtggttccgctcctcacccaaaccggttgaaccggtcgcagctccg
gagcccgccaaaaagccgcgcgaaggtcgcggggatggccgtcgcgatggtcgccgcggt
ggccgaaatggcaatcgtcgcgacgaagagcgcggcgaacgcaaggaacgtcctgagcgc
aaggagcgcaatgcagtcgacaaggctccgcaagacggaacaccggcctcgaacggcgaa
cgcaaggaacgccgtccgcgtggtgaacgcaaggagcgcggcgaacgccagcagcaagcg
gaaacggttgaaaacaagctggttcagcaaacagcagccgccgatgccgccgttgctccg
ctgctggccaacgaagccccagacgcacagggcaacgaagagcaaggcaatcgtcgtcgc
ggtcgtcgcggtggcagaggtcgtggcgagcgtcgcaacgaggctgactccactccggtg
gccgaggtgctaccagtgattgagccggctgttgagccaatcaaccaagagccggttgtc
gttgtaatccctgcggccgaaccggttgttgtcgcagccgaagttgtcaccccggttgtt
gaaccagtggcctcgcccattgttgaaccggttcaggttgccgaagttattgaagctgcc
ccagctgcaatcatcgaagcgcttccggtcgaaattcaggaaagcccgaaagccgaagca
cctgcacctgctcctgctcctgtcgtggcagaaccagtcaatcttgaagcgacactcgct
gaaagcggtttggtcatggttcaaacgacatctgctgcagtcgctgctgcccagccagaa
cccccggtcaaactgggtcgtccgcgcaaggcgaaaccggcaagcaagcaggctgaaagc
gaatcgctggtcatggttgaaaccgccaaataa
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