Dechloromonas aromatica: Daro_2448
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Entry
Daro_2448 CDS
T00259
Name
(GenBank) 3' exoribonuclease:RNA binding S1:KH, type 1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dar
Dechloromonas aromatica
Pathway
dar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Daro_2448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dar03019
]
Daro_2448
03016 Transfer RNA biogenesis [BR:
dar03016
]
Daro_2448
Enzymes [BR:
dar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Daro_2448
Messenger RNA biogenesis [BR:
dar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Daro_2448
Transfer RNA biogenesis [BR:
dar03016
]
Prokaryotic type
tRNA degradation factors
Daro_2448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
KH_N4BP1_2nd
DUF4342
KH-I_KHDC4-BBP
Csa1
Terminase_6C
S1_2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AAZ47183
UniProt:
Q47D98
LinkDB
All DBs
Position
complement(2647811..2649958)
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AA seq
715 aa
AA seq
DB search
MFNVVKKTFAYGDHQVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAKPGQDFFPLT
VDYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSL
NPEIDSDIPALIGASAALAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLDLVVA
GTEAAVLMVESEADQLSEEVMLGAVVFGHTEMQKAINAINELVEEAGKPEWEWEAAPKDE
ALVASLSALVSAKLEEAYNITVKQTRSQAVKAIRAEAVAALCTGAEGAPDENTVGNLFHE
IEASIVRGRILSGAPRIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTN
RDEQIIDALAGEYRDRFMLHYNMPPYATGECGRVGTPKRREIGHGRLAKRALLAVLPKPE
DFSYSMRLVSEITESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFAVLT
DILGDEDHLGDMDFKVAGSTTGITALQMDIKIQGITKEIMQVALAQAKEARIHILNLMQE
SAAGPREEMSAYAPRLYTFKINPEKIRDVIGKGGAVIRALTEETGTTIDIQDDGTITIAA
TSGEAAAAARSRIDAITAEVEIGKIYEGTVLKILDFGAIVSVLPGKDGLLHISQIAQERV
NKVEDYVKEGQIVRVKVLETDDRGRVKLSMKAAAADEGTVAQPVAAPEAAVQQQQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgtcgttaaaaagaccttcgcctatggggaccatcaggtcaccatcgaaacc
ggtgaagttgcccgccaggctggcggtgctgttctcgtttccatggaagaaaccgtggtt
ctggttaccgtcgtggctgccaagaatgccaagccgggtcaggatttcttcccgctgacc
gttgattaccaggaaaagacctacgctgccggccgtatccccggtggcttcttcaagcgc
gaaggccgtccttccgaaaaggaaacgctgacctgccgcctgatcgaccgtccgatccgt
ccgctgttcccggatggtttctacaacgaagtccaggtcatcgccacggtgatgtccctg
aacccggaaatcgattctgacattcccgccttgattggcgcttccgccgcactggctatt
tccggcgtgccgttcaacggcccgatcggcgccgctcgcgttggttatatcgatggtcag
tacgtcctgtgcccgaccctgagccaactcaagggtagccagctcgacctcgtcgtcgcc
ggtaccgaagctgctgtgctgatggttgagtccgaagccgaccagctgtccgaagaggtc
atgctcggcgccgtcgtttttggccacaccgaaatgcagaaggcgatcaacgccatcaac
gaactggttgaagaagccggcaagccggaatgggaatgggaggctgcgccgaaagacgaa
gcgttggttgccagcctgtccgctctggttagcgccaagctcgaagaagcctacaacatc
accgtcaagcaaacgcgcagccaggccgtcaaggccatccgtgctgaagctgttgccgcc
ctttgtaccggtgccgaaggcgccccggacgaaaacaccgtcggcaacctgttccatgaa
atcgaagcctcgatcgttcgtggccgcatcctgagcggtgccccgcgtatcgacggtcgc
gacacgcgcactgtgcgtccgatcaccatgcgttctggcgttctgccgcgtacccatggt
tccgccctgtttacccgtggcgaaacccaggcgctggcagttgccacgctcggtaccaac
cgcgacgagcagatcatcgatgccctggctggtgagtatcgtgatcgcttcatgctgcac
tacaacatgcccccgtacgccaccggcgaatgcggtcgtgtcggtacgccgaagcgtcgt
gaaatcggtcacggccgtctggccaagcgtgcactgcttgctgtgctaccaaagccggaa
gacttctcctactcgatgcgtctggtttcggaaatcactgaatccaacggttcgtcctcg
atggcttccgtctgtggcggctgcctcgccctgctcgacgccggtgtgccgctcaaggcc
cacgtcgccggtatcgccatggggctgatcaaggatggcaatcgttttgccgttctgacc
gacattctcggcgacgaagatcacctcggtgacatggacttcaaggtggccggttcgaca
accggtattactgcgctgcagatggacatcaagatccagggtatcaccaaggaaatcatg
caggttgcactggcccaggccaaggaggcacgcatccacatcctgaacctgatgcaggaa
tcggctgccggtccgcgtgaagagatgtctgcttacgctccgcgtctgtataccttcaag
atcaatccggaaaagatccgtgacgtcattggcaagggcggtgctgttatccgcgccctg
accgaagagaccggcacgacgatcgatattcaggatgatggcacgattaccattgctgcc
accagtggcgaagctgctgctgcggctcgttcgcgtattgatgcgattaccgctgaagtc
gagattggcaagatctatgaaggaactgtgctgaagattcttgacttcggtgcaatcgtc
tccgtgttgccgggcaaggatggtttgctgcacatctcccagatcgctcaagagcgagtc
aataaggtcgaagattacgtcaaggaaggccagattgttcgcgtcaaggttctggaaacc
gatgaccgtggtcgcgtcaagctgtcgatgaaggctgctgcagcggacgagggtacggta
gctcagccggtcgctgcaccagaggccgctgtccaacaacagcagtaa
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