Dechloromonas aromatica: Daro_3909
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Entry
Daro_3909 CDS
T00259
Name
(GenBank) Ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dar
Dechloromonas aromatica
Brite
KEGG Orthology (KO) [BR:
dar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dar03016
]
Daro_3909
Enzymes [BR:
dar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Daro_3909
Transfer RNA biogenesis [BR:
dar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Daro_3909
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AAZ48637
UniProt:
Q478U4
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All DBs
Position
complement(4204259..4206172)
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AA seq
637 aa
AA seq
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MNVLFEEDGGFKAGSIMADNDSSLQVEMPSGKRSKIKAATVLLRFEKPSAAALLDQATPL
AEEIEAEFLWECASDGEFSFLDFARDYYGHEPAPIEATAVLLALHAAPVYFHRKGKGRFR
KAPADILAAALASLEKKRQQALTMEGWIGELREFRLPPEIGLLTDALLYAPDRNKPETKA
FETACAEAGLTAAQMLFKCGAIKSPYFLHYRRFLHEQFPKGTAFPALDAPKLPSDLPRAD
VRAFSIDDANTTEIDDALSVVKLPGIGSRIGIHIAAPGLAIEHGSPLDGIARARLSTVYM
PGNKITMLPDAVVQNYTLAGGVDCPAVSLYLTVNESLEILSHESRLEMVHIAANLRHHEI
EPWFNAETIAGPLPDQPFKDELVHLWHFANACEGRRGKPSAMQGINDYNFEIVGDLADPD
ACSVEISERKRGSPLDKLVAELMIVANSTWGGLLAEKNIACLYRAQTQGKVRMTTSPLPH
EGLGVPQYAWMTSPLRRYCDMVNQWQLIACLKGETPAFAQKSAELFGAMRDFEVTYAAYA
DFQRQMERYWCLRWIQQRGLTEIDATLRREQSVKLDHLPLLLRVPSIPSDLSPGQRIRLA
VESLDLLAPEITCRFLNLLGESDAAEVAEEAEEGEGA
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtattgtttgaagaagatggcggctttaaggccggcagcatcatggccgacaac
gatagctcgttgcaggtcgaaatgccctccggcaagcgcagcaagatcaaggccgcaacg
gtattgttgcgctttgaaaagccctctgcggctgccttgctcgatcaggctacgccgctg
gccgaagagatcgaagctgaattcctgtgggagtgcgcaagcgatggcgaattttcgttt
cttgattttgcccgtgattactacggacacgaacccgcgccgatcgaagcgacggcggtg
ctgcttgccctgcacgccgcgcccgtctatttccaccgcaaaggcaagggccgcttccgc
aaagcgcctgccgacattctcgcagctgctctggccagtcttgaaaaaaagcgtcagcaa
gcgctcacgatggaaggctggattggcgagctgagagagttccgcttgccgccggaaatt
ggcttgctgaccgatgcgctgctctatgcaccggatcgcaacaaaccggaaaccaaggcc
tttgaaaccgcctgcgccgaagcgggcctgacggcggcgcaaatgctcttcaagtgcggt
gccatcaagtcgccgtacttcctgcattaccgtcgtttcctgcacgaacaattccccaag
ggcacggctttcccggcgcttgatgcgccaaagctcccgagcgatctgccgcgcgccgac
gtccgggctttctcgatcgatgatgccaacaccaccgagatcgacgatgcactatcggtc
gtcaagctgcccggcatcggctcgcggatcggcatccacatcgctgcaccggggctggcc
atcgagcatggttcgccacttgacggcatcgcccgcgcccggttgtcgacggtttacatg
ccgggcaacaagatcaccatgctgcccgatgccgtggtccagaactacacgctggccggt
ggtgtcgattgcccggccgtgtcgctgtacctgacggtcaatgaatcgctggaaattctc
agccacgagtcgcggctggaaatggtgcatatcgctgccaacctgcgccaccatgaaatc
gaaccgtggttcaatgccgaaaccatagccggcccgctgcccgaccagccattcaaggac
gagctggttcacttgtggcactttgccaatgcctgcgaaggccggcgcggaaaaccgtcg
gccatgcagggcatcaacgactacaacttcgaaatcgttggtgatctggccgatccggat
gcctgttccgtcgagattagcgaacgcaagcgcggcagtccgctcgacaagctggtcgcc
gagttgatgattgttgccaattcgacctggggcggcctgctcgctgaaaagaatattgcc
tgcctgtaccgtgcccagacgcagggcaaggtgcgcatgacgacttcgccgctgccgcat
gaaggcctgggcgtgccgcaatatgcgtggatgacctcgccgctgcgtcgttattgcgac
atggtcaaccaatggcagctgatcgcctgtttgaaaggcgaaaccccggcttttgcccag
aaatcggccgaattgttcggcgccatgcgtgattttgaggtcacctacgcagcttatgcc
gattttcagcgccagatggagcgttactggtgcctgcgctggattcagcagcgcggcttg
actgaaatcgatgcgaccctgcgccgagaacagagcgtcaagcttgaccatttgccgctg
ctgctgcgggtgccttcaattccgtccgacctgtcgccggggcagcgcattcgtctggca
gtcgagagccttgatttgctggcaccggaaattacctgccgtttccttaatctgcttggc
gaaagcgacgctgcggaagtcgcggaggaagccgaagagggagagggcgcgtga
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