Pseudodesulfovibrio aespoeensis: Daes_0253
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Entry
Daes_0253 CDS
T01382
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
das
Pseudodesulfovibrio aespoeensis
Brite
KEGG Orthology (KO) [BR:
das00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
das03032
]
Daes_0253
03400 DNA repair and recombination proteins [BR:
das03400
]
Daes_0253
Enzymes [BR:
das01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Daes_0253
DNA replication proteins [BR:
das03032
]
Prokaryotic type
DNA Topoisomerases
Daes_0253
DNA repair and recombination proteins [BR:
das03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Daes_0253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
zf_C2H2_13
Zn_ribbon_RPB9
Toprim_4
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
ADU61280
UniProt:
E6VVS8
LinkDB
All DBs
Position
complement(280919..283384)
Genome browser
AA seq
821 aa
AA seq
DB search
MPKDLIIVESPAKVKTISKFLGKDYMVDASVGHVRDLPTRDLGVDEENGFTPRYEIIQGK
EEVVKRLKAAAKKAGTVYLAPDPDREGEAIAWHVAELLRPVNSNIRRIQFNEITARAVKE
ALENAQDLNQNLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKLLVEREK
ERRAFKTDEYWPFKVLLEGGNPPPFWLELHKLSGKAVKPGVNHISTQAEAEALQQTLEAG
QFTVDSVQEKQRKRDPLPPYITSTLQQDANRRMGYSAKRTMSVAQRLYEGVELGRHGTTA
LITYMRTDSVRIAKEAQEAARELIIDRFGADYYPSKPRNFKTKGGAQDAHEAIRPVDVTI
TPDDVKSSLPSEQHKLYRLIWQRFVASQMAAASFWDTTVLVSAPATEWRAKGERLLFPGF
LAAMDKSGTEAETELPKLVEGETLRLNELKKEQKFTQPPPRYSEASLVKTLEELGIGRPS
TYAAIISTLLDREYARQEEKRFVPTELGFTVSDQLSEHFHALMDVGFTAQMESLLDDVAA
GKQDWAKLLKDFGHDFYPTLEKARTEMARSQQETDIVCENCGKPMSIKFGKTGEFLGCTG
FPTCRTIKNFTRDENGAIRIVERETPEETGVECEKCGKPMAIKQSRRGEFLGCTGYPDCK
NIVNFQRDENGAISVIESEKLQVVGSCPDCGGELLLKKARTGSRFIACSNYPDCTYAAPF
STGVPCPVEGCAGELVEKSSRRGKIFFSCSAYPKCDYAVWNWPVNEPCPKCGHPILTRKT
TKDKGEHLACPQKGCGYTREPDEPADTPDTPDLPDMPDDNA
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagatctgatcatcgttgagtccccggccaaagtgaagaccatcagcaagttc
ctgggcaaggactatatggtggacgcctcggtcggccatgtgcgcgacctgcccacccgc
gacctgggcgtggacgaggagaacgggttcaccccgcgctacgagatcatccagggcaag
gaagaggtggtcaaacggctcaaggccgcagccaaaaaggccggcaccgtctacctcgcg
cccgacccggaccgcgagggagaggccatcgcctggcatgtggccgagctgctcaggccg
gtcaacagcaacatccgccgcatccagttcaacgagatcaccgcccgcgccgtcaaggag
gcgctggaaaacgcgcaggatctcaaccagaacctgttcgactcccagcaggcccggcgc
atcctggaccggctggtgggctacaagatttcccctatcctgtggaagaacgtcaagcgc
ggcatctctgccggacgcgtccagtccgtggcgctgaagctgctggtggagcgcgaaaag
gaacgccgcgccttcaagaccgacgaatactggcccttcaaggtgctgctcgaaggcggc
aaccccccgcccttctggctcgaactgcacaagctctcgggcaaggcggtcaagccgggc
gtcaaccacatctccacccaggccgaggccgaggcgctccagcagaccctggaggcgggc
cagttcaccgtggactcggtgcaggaaaaacagcgcaagcgcgaccccctgccgccctac
atcacctccaccctgcaacaggacgccaaccggcgcatgggctactcggccaagcggacc
atgtccgtggcccagcggctctacgagggtgtcgagctcggcaggcacggcaccaccgcc
ctgatcacctacatgcgtaccgactccgtgcgcatcgccaaggaagcgcaggaagcggcc
agggaactgatcatcgaccgcttcggggccgactactatccgtcgaaacccaggaatttc
aagaccaagggcggcgcgcaggacgcgcacgaagccatccggcctgtggacgtgaccatc
acgcccgacgatgtcaaaagctcgctgccctcggagcagcacaagctctaccgcctcatc
tggcagcggttcgtggcctcgcagatggccgcggccagcttctgggacaccactgtgctg
gtctcggccccagcgaccgagtggcgggccaagggcgagcgcctgctcttccccggtttt
ctcgcggccatggacaaatccggcaccgaggccgagaccgagctgcccaagctggtcgag
ggcgagaccctgcgcctgaacgagctgaaaaaggaacagaagttcacccagccgccgccg
cgctactctgaagcctcgctggtcaagaccctggaagagctgggcatcggcaggccgtcc
acctatgcggccatcatctccaccctgctcgaccgcgagtacgcccgtcaggaggagaag
cggttcgtgcccaccgaactcggcttcaccgtgtccgaccagctctccgaacacttccac
gccctgatggatgtcggcttcaccgcccagatggagagcctgctggacgacgtggccgcg
ggcaagcaggactgggccaagctgctcaaggacttcggccacgacttctaccccaccctg
gaaaaggcgcgcacggaaatggcccgctcccagcaggagacggacatcgtctgcgagaac
tgcggcaagcccatgtccatcaagttcggcaagaccggcgaatttctgggctgcaccggg
tttcccacctgccggaccatcaagaacttcacccgcgacgagaacggggccatccggatc
gtggagcgcgaaacgccggaggagaccggcgtggaatgcgaaaagtgcggcaagcccatg
gccatcaagcagagccgccggggtgaattcctgggctgcaccggctacccggactgcaag
aacatcgtcaatttccagcgcgacgaaaacggcgccatctcggtcatcgagtcggagaag
ctgcaggtggtgggctcctgcccggactgcggcggcgagctgctgctcaagaaggcgcgc
accggctcgcgcttcatcgcctgctccaactacccggactgcacctatgccgcgcccttt
tccacgggcgtgccctgcccagtggaggggtgcgctggcgaactggtggaaaaatcctcg
cgccggggcaagatattcttctcctgctccgcctaccccaagtgcgactacgcggtctgg
aactggccggtcaacgagccgtgccccaagtgcggacacccgatcctgacccgcaagacc
accaaggacaagggcgaacacctggcctgcccccagaaagggtgcggctacacccgcgaa
ccggacgagcctgccgacactccagacacacccgacctgccagacatgcccgacgacaac
gcatag
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