Pseudodesulfovibrio aespoeensis: Daes_0929
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Entry
Daes_0929 CDS
T01382
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
das
Pseudodesulfovibrio aespoeensis
Pathway
das03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
das00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Daes_0929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
das03019
]
Daes_0929
03009 Ribosome biogenesis [BR:
das03009
]
Daes_0929
Enzymes [BR:
das01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Daes_0929
Messenger RNA biogenesis [BR:
das03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Daes_0929
Ribosome biogenesis [BR:
das03009
]
Prokaryotic type
rRNA helicases
Daes_0929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
CMS1
Flavi_DEAD
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADU61946
UniProt:
E6VS13
LinkDB
All DBs
Position
complement(1050532..1052187)
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AA seq
551 aa
AA seq
DB search
MTDFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLP
IIETAVENAKRVQALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLKALKS
GVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTL
LFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDAEP
DFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDV
AARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSS
GIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLLEGREPEDVVAALL
KHAFGDELVESSYREINTVTAANRGRADLVCSLGRVDGMNPKDFVDFISQAARIKPWSIQ
HVRVQGERTTFTVPGPEAELVVSRVLSRDGRPLVSQGDSPKKPPYRRDYPKKGAPGPGKH
PFKKPYKPRKD
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttcaaggaactgggcctgtccgaggagactctggcggccctggaatccaag
ggcttcacatgccccaccccgatccaggagcggaccatccccctgctgctgcaaggcgcg
gtcgacatcgtcggccaggcccaaacaggcacgggaaagaccgcggcctttggcctgccc
atcatcgaaaccgctgttgaaaacgcgaaacgggtgcaggcgcttgtcctgacccccacc
cgcgagctggccatccaggtggccgacgagatcaactccctcaaggggaagaagcgcatc
cgcgtcctgcctgtctacggcggacaggccatccacatgcagctcaaggcgctcaaaagc
ggcgtggacgtggtggtcggcaccccgggccgcatcatggaccacctcaagcgcggcacc
ctgcacctcgacgaactcgacttcttcgtcctcgatgaggcggacgagatgtgcaacatg
ggctttgtggacgatgtgcgcgagattctcaaatccgccaacaccgaccgccgcaccctg
ctcttctcggccaccatgccccacgaggtcatgcgcatcgccaaggagttcatgggcgac
tacgaactgatcactgtcaaggccgaaaaaaacgacatcccgctcaccaagcaggtcttc
cacgaggtggccgattcggaccgcttcgaagccctgtgccgggtggtggacgccgagcct
gacttctacggcctggtcttcacccgcacgcgggccgacgccgaccgcgtggccagcagg
ctcacggagcgcggctacccggcagagccgatccacggcgacctgtcccaggcccggcgc
gaggagatcctcggcaggttcaagaagcggctggtcaccatcctggtggccaccgacgtg
gccgcgcgcggcatcgacgtgcccgacctgacccatgtggtcaacttcgccctgccccag
gacccgcagaccttcgtgcaccgcaccgggcgcacgggccgggcgggcaaggagggcgtg
gccatctccctgatcgcccccagcgagttccgacgcctgatgttcatcaccaagagctca
ggcatcgacatcaccaaggccaagctgccgtgcatccacgatgtcatctactccaagaag
agccggatggtggacggactggacggcatcatccaggaagaggcccacacaccctatctg
cccatggcccgagacctgctcgaaggccgcgagccggaggatgtcgtcgccgccctgctc
aagcacgcctttggcgacgagctggtggagtcgagctaccgcgagatcaacaccgtcacc
gcggccaaccggggccgcgccgacctggtctgctccctggggcgcgtggatggcatgaac
cccaaggatttcgtggacttcatttcccaagcggcgcgcatcaagccgtggtccatccag
catgtgcgcgtgcagggcgagcggaccaccttcaccgtgcccggccctgaggccgagctg
gttgtcagccgcgtcctcagccgcgacggacgccccctggtcagccagggagattcgcca
aaaaaaccgccctaccgccgcgactaccccaaaaaaggcgcgcccggtccgggcaaacac
cccttcaagaagccgtacaagcccaggaaggactaa
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