Pseudodesulfovibrio aespoeensis: Daes_1504
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Entry
Daes_1504 CDS
T01382
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
das
Pseudodesulfovibrio aespoeensis
Pathway
das02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
das00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Daes_1504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
das03021
]
Daes_1504
Transcription machinery [BR:
das03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Daes_1504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
DUF3967
RNA_pol_Rpb1_5
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ADU62518
UniProt:
E6VWL7
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All DBs
Position
1682402..1684147
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AA seq
581 aa
AA seq
DB search
MSNIKEIQQIKTLIAEGKQRGFLTYEELSKALPSDYNTPEQLEEIHAIFDQMGIALVDSD
EDDKKLETDDKELELTEKDDDSADYASRSTDPVRMYLREMGAVPLLDREGEVVIAKKIEN
GELEVLYSLIEVPVAVEELISVGEDLKDGRVKLKDVVKTIEEDDPSEDEMNQRQRVIFLL
DEVKKLFKKKRKIYEKLDYCAQTDKRVYGVQKDILVYKDEVVTRLRDIKLEKTLIDRIIE
TVNDYVRQMHNCQRDLSAYVLSVGQTKAEIEELFRQVDARTVNPVVAADTLGLTVEEFFS
FKEMLAGKLEIMNRLQDKCCHSVHDLEEVLWRIKRGNLSAMRAKQELIRANLRLVVSIAK
KYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRI
PVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDYPLEKVKKVLKIAKEPISLETPIG
DEEDSSLGDFIEDKKATAPAEEVVSTKLGEQIASVLSDLTPREEQVLRKRFGIGEKSDHT
LEEVGKLFNVTRERIRQIEAKALRKLRHPVRSALLRSYFEN
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacattaaggaaatccagcagatcaagaccctgattgccgaaggcaagcagagg
ggatttctgacatacgaggagttgagcaaggccctgccttctgactacaacaccccggaa
cagctggaagaaattcacgccatctttgaccagatgggcatcgccctcgtcgattcggac
gaagacgacaagaagcttgaaaccgacgacaaggaactcgagctgaccgaaaaggacgac
gattccgccgattacgcctcgcgcagcaccgaccctgtgcgcatgtatctgcgcgagatg
ggcgccgtgccgctgctcgaccgcgagggcgaggtggtcatcgccaagaagatcgagaat
ggcgagcttgaggtgctctactccctgatcgaggtgcccgtggccgtggaggagctcatc
tccgtgggcgaggatctcaaggatggccgcgtcaagctcaaggacgtggtcaagaccatc
gaggaggacgatcccagcgaggacgagatgaaccagcgccagcgcgtcatcttcctgctc
gacgaggtcaagaagctcttcaagaagaagcgtaagatatacgagaagctcgactactgc
gcccagaccgacaagcgcgtctacggcgtgcagaaggacatcctcgtctacaaggacgag
gtggtcacccgtttgcgcgatatcaagctggagaagaccctgatcgaccgcatcatcgag
acggtcaacgactacgtccgccagatgcacaactgccagcgcgacctttcggcctatgtc
ctgtccgtgggccagaccaaggcggagatcgaggagttgttccgtcaggtggacgcgcgc
accgtcaatccggtggtcgccgccgacaccctgggcctgaccgtggaggagttcttctcc
ttcaaggagatgctggcgggcaagctggagatcatgaaccggctccaggacaagtgctgt
cacagcgtgcacgacctggaggaagtgttgtggcgcatcaagcgcggcaatctctcggcc
atgcgcgccaagcaggagctcattcgcgccaacctgcgtctggtcgtctccatcgccaag
aaatacaccaaccgcggccttcagttcctggatctcatccaggagggcaacatcggcctg
atgaaggcggtggacaagttcgaataccagcgcggctacaagttctccacctacgccacc
tggtggattcgtcaggccatcacccgcgccatcgcggatcaggcccggaccatccgcatc
ccggtgcacatgatcgagaccatcaacaagctcatccgcacctcgcgctatctggtgcag
gagcttggccgcgacccctcgcccgaggagatcgccgagcgcatggactacccgctggaa
aaggtcaagaaggtcctcaagatcgccaaggagcccatctcgcttgagacccccatcggt
gacgaggaggattcgagcctgggcgatttcatcgaggacaagaaggccactgcgcccgcc
gaggaggtggtctccaccaagctcggcgagcagatcgcctcggtcctctccgacctcacc
ccgcgcgaggagcaggtgctgcgcaagcggttcggcatcggcgagaagtcggaccacacc
cttgaggaggtgggcaagctcttcaacgtcacccgcgagcgcatccgccagatcgaggcc
aaggcgctccgcaagctgcgccatccggtgcgcagcgcgctgctccgttcctacttcgaa
aactag
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