Pseudodesulfovibrio aespoeensis: Daes_1734
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Entry
Daes_1734 CDS
T01382
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
das
Pseudodesulfovibrio aespoeensis
Pathway
das03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
das00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Daes_1734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
das03400
]
Daes_1734
Enzymes [BR:
das01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Daes_1734
DNA repair and recombination proteins [BR:
das03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Daes_1734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADU62746
UniProt:
E6VYI3
LinkDB
All DBs
Position
complement(1922233..1925715)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPSILPGAITDFIAGKTQTLRVFKSGPGTQAFIARRMLDHGRSAVIVVPGAQEFKQMRAL
LALFSHGAQPEHAPAWERDWIFLPPYLSRQPDAQAWSERWAALYALTYGKRPCGVLMTVD
NLLPHWPEASVLRENWVSLTRGEEMSPDILLEQLVAWGYVRRKLVSAPGEMAMRGDILDI
HAPGYDLPLRLEFFGDAIEEIRLFDPATQRSRADLTEAVLLPVSPGITSGGYAAQAREVW
NRLRRTGEIGAGDESALLGRLDAGDAFVWPGMYYSASVGVESYFPEDSVYLLSSGGALRA
RLEDQDQAWRDSVDEELRQKGVRWPLRFFCRSHEGARTAWQNAGQMVFEELTVGREKNGI
DLAETPYSDFTDLFWQPEASRRPWTALIAGLREWGRSGFQTILSFRSERSRAKFLNMAEQ
EHLPISLDYAPRAGGLFALVSPLRKGMELAWSRTRILGEEVLQPEAPRAHSGRDTAFKGL
DKYEDLSDGDLLVHRDYGLAQFGGLHHMSIGDAANDYLLLFFSGDDKLYLPVDRLNLVQR
FKGPEGARQPALDKLGGTRWSATTAKVRKAVEKIAQELVEMYAFRRVAKGFSYGPPDDMY
SEFEATFGFEETPDQDKAVRDVFSDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAALEGR
QTALLCPTTVLAEQHYQTFSRRMEGFPVRIGLLSRFVPAKRQQAVLQAASRGELDILIGT
HRILSKDVELPNLGLLILDEEQRFGVKHKEKLKHFRHNIDVLTLTATPIPRTLQLSLSGI
RGLSVIETPPLDRKPVETAITERDPVALKAALHRELERGGQVYWVYNRVNGLERVVEFVR
ELAPDARVGMAHGQMSEKGLEDAMRGFWHGELDVLVCTAIVESGLDFPNANTLIVDQAQL
FGLGQLYQLRGRVGRSDRQAYAYFVVPSIDDLSEMVRKRLRIILDMDYLGAGFKIAMEDL
RMRGAGNILGEAQSGQIAKVGLDLFLEMLEEEVRRVRGETEIRASDPELNFVFEAHIPGS
CIPDARERLRYYRALSSARDEMTLRELEAEIRDRFGHLPDELETFLGVLRLKQTLSRLRA
TRAELYPARGVISWGEGAPSVSTEALLGWVARRDGRARLLPPAKLEIRYDAAESMRLALE
NTAVELEELLEPVAVKPQEN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccatccattcttccaggagccatcaccgatttcatcgcgggcaagacccagaccctg
cgcgtcttcaagagcgggccgggcacccaggccttcatcgccaggaggatgctcgatcat
ggccgcagcgcggtcatcgtggttcccggcgcccaggagttcaagcagatgcgggcgctc
ctggccctgttctcccatggggcgcagccggaacacgcaccggcctgggagcgcgactgg
attttcctgcccccgtatctctcccgtcagcccgatgcccaggcctggagcgagcgctgg
gccgccctctatgccctgacctatgggaaacggccctgcggcgtgctcatgaccgtggac
aacctcctgccgcactggcccgaggcgtctgtcctgcgcgaaaactgggtttccctgacc
aggggcgaggagatgtcgcccgacatcctgctggagcagctggtggcctggggctatgtc
cggcgaaagctggtctcggcccccggcgagatggccatgcgcggcgacatcctcgacatc
cacgcgccgggctacgacctgccgctgcgcctggaattcttcggcgacgccatcgaggag
atccggctctttgatccggccacccagcggtcgcgggcagacctgactgaggcggtgctg
ctgccggtgtcgcccggcatcacctctggcgggtatgcggcccaggcccgcgaggtctgg
aacaggctgcgccgcacgggcgagatcggcgcgggcgatgagtccgcgctgctcggtcgg
ctcgacgcgggcgatgcctttgtctggccgggcatgtattatagcgcgtccgtgggcgtg
gagagttatttccccgaagacagcgtgtatctgttgtcatcgggcggggcgctccgggcg
cggctggaggaccaggatcaggcttggcgggactctgtggacgaggagttgcgccagaag
ggcgtgcgctggccgctgcgtttcttctgccgctcccacgagggcgcgcgcacggcgtgg
cagaacgccgggcagatggtcttcgaggagctgaccgtcggacgcgagaagaacggcatc
gacctggccgagacgccttacagtgatttcaccgatctcttctggcagcccgaggcgtcg
cgccgtccgtggaccgcgctcatcgccgggcttagggagtggggccggtccggcttccag
accattctcagcttccgctccgagcggtcgcgcgccaagttcctgaacatggccgagcag
gagcatctgcccatctcgctggactacgcgcccagggcaggggggctgttcgccctggtc
tcgccgctgcgcaagggcatggagctggcctggagccggacgcgcatcctgggcgaggag
gtgctccagcccgaagcgccgcgcgcccattcgggccgcgacacggccttcaaggggctg
gacaagtatgaagacctgtccgacggcgacctgctggtccaccgcgactacgggctggcc
cagttcggcggcctgcaccacatgagcatcggcgacgcggccaacgactatctgctcctg
ttcttttccggcgacgacaagctctacctgcccgtagaccggctcaatctcgtgcagcgg
ttcaaggggccggagggggccaggcagcccgccctggacaaactcggcggcacgcgctgg
agcgccaccacggccaaggtccgcaaggcggtggagaagatcgcccaggaactggtcgag
atgtacgcctttcgccgggtggccaagggattctcctacggtccgccagacgacatgtat
tccgagttcgaggccaccttcgggttcgaggagacgccggaccaggacaaggccgtgcgc
gacgtgttcagcgacatggaaaagcccgagcccatggaccgcctcgtctgcggggacgtg
gggtttggcaagacagaggtggccctgcgcgccgccttccgcgccgccctggagggcagg
cagacggccctgctgtgtcccaccaccgtcctggccgagcagcattaccagaccttttcc
aggcgcatggagggttttcccgtgcgcatcgggctgctcagccggtttgtcccggccaag
cggcagcaggccgtgctccaggccgcgtcgcgcggcgagttggacatcctcatcggcacc
caccgcatcctctccaaggacgtggaactgcccaacctcggcctgctcatcctggacgag
gagcagcggttcggggtcaagcacaaggaaaagctcaagcatttcaggcataacatcgac
gtgctcaccctgaccgccacgcccatcccgcgcaccttgcagctctcgctctccggcatc
cgggggctttcggtcatcgagaccccgccgctggaccgcaagcccgtggagaccgccatc
accgagcgcgatcccgtggccctcaaggccgcactgcatcgcgaactggagcggggcggg
caggtctactgggtctacaaccgggtcaacggcctggagcgggtggtcgagttcgtgcgc
gagctggcgcctgacgccagggtgggcatggcccacggccagatgagcgagaaggggctt
gaggacgccatgcgcggcttctggcatggcgagctggacgtgctggtgtgcacggccatc
gtcgagtccgggctggattttcccaatgccaacacgctgatcgtggaccaggcccagctc
ttcggcctgggccagctctaccagctgcggggcagggtgggccgcagcgacaggcaggca
tacgcctatttcgtggtgccgagcatcgatgatctctcggagatggtgcgcaaacgcttg
cgtatcattctggacatggattatctgggggcagggttcaagatcgccatggaggacctg
cgcatgcgcggcgcgggcaacatcctcggagaggcccagtccggccagatcgccaaggtc
ggccttgacctgttcctggagatgctagaggaagaagtgcggcgggtgcgcggggagact
gaaattcgggccagcgatcccgagttgaactttgtctttgaggcgcacatccccggcagt
tgcatcccggatgcgcgcgagcggctgcgctattaccgggcgctttcctcagccagggac
gagatgacactgcgagagctggaggccgagatccgcgacaggttcggtcacctgcccgac
gaactggagacctttctgggcgtgctgcggctcaagcagaccctgtcgcgtctgcgggcg
accagggccgagctgtatccggcgcgcggcgtcatttcctggggcgagggcgcgccatcg
gtcagcaccgaggccctgctcggctgggtcgcgcggcgggatggccgggccaggctcctg
ccccccgccaagctcgaaatccgctacgacgccgccgaatccatgcgtctggcccttgag
aacacggctgtcgagcttgaggaactgctcgaaccggtggccgtcaaaccgcaagaaaat
tag
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