Desulforapulum autotrophicum: HRM2_05280
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Entry
HRM2_05280 CDS
T00861
Symbol
rtcB
Name
(GenBank) RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dat
Desulforapulum autotrophicum
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dat03016
]
HRM2_05280 (rtcB)
Enzymes [BR:
dat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HRM2_05280 (rtcB)
Transfer RNA biogenesis [BR:
dat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HRM2_05280 (rtcB)
Prokaryotic type
tRNA splicing ligases
HRM2_05280 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACN13642
UniProt:
C0QHT4
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All DBs
Position
complement(600396..601595)
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AA seq
399 aa
AA seq
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MGKRPRIQQFAPYEIWGREIEADAIRQMDNACTLPISIQGALMPDAHMGYGLPIGGVLAV
KDAVIPYAVGVDIACRVKMSVLDLAFDRFEALQEPFRAALEQGTRFGMGESFKRPHNHRV
MDEDWTFCPTVKGLKDKAWQQLGTSGSGNHFAEFGLLTLSAAEMGLEPGNYLALLTHSGS
RGAGAAIAKHYSTLARRLHPELPKHLSDLAWLDLDRSEGLEYWKAMELMGRYSSANHDII
HQSVLSHLGAVSVLTLENHHNFAWKMQCGDEEVIVHRKGATPADRGVLGVIPGSMATPGF
VVRGLGNTRALNSAAHGAGRKMSRNAAIKQFSRKDLNRFLEKKGVTLVSAGLDEVPMAYK
DILDIMAQQKDLVETIARFDPKLVKMAEPDGKGRRKQKR
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaagaccccgtatccaacagtttgccccctatgaaatctggggaagggagatt
gaggccgatgccatacgtcagatggacaacgcctgtaccctccccatatccatccagggg
gcactcatgcccgatgcccacatgggttatggacttcccattggcggagtcctggccgta
aaggatgccgtcattccctatgccgtaggtgtggacatcgcctgccgggtaaagatgagt
gtcctggatctggcatttgacagattcgaggccctacaggaaccctttagggcagccctg
gagcaggggacaagatttgggatgggagaatcgtttaaacgaccccataaccaccgggtc
atggatgaagactggacgttctgcccaactgtgaaagggctgaaagacaaggcctggcag
cagcttggcaccagtgggtcgggcaaccactttgccgaatttggacttctgaccctatct
gcagcagagatggggcttgaacccggcaactatctggcacttttgacccacagcggaagc
aggggagcgggggcggccattgccaaacactacagcacgcttgcccgccgcctccatcct
gaacttcccaaacatctaagcgaccttgcctggctcgaccttgatcggtcagaagggctt
gaatactggaaggcaatggaactcatgggcagatattcgtctgcgaaccatgatatcatc
caccaaagtgtattgagccatctgggggcggtttcggtcctgaccctggaaaatcaccat
aactttgcgtggaaaatgcagtgtggggatgaggaggtgattgttcaccgaaaaggagcg
actcccgcagacaggggagtcctaggcgttattccgggatccatggccacccccggtttt
gttgtgaggggacttggaaacacccgggccttaaattccgcagcccatggggcaggaagg
aagatgagccgcaatgcggcaataaagcagtttagcagaaaggatctgaaccgattccta
gaaaaaaaaggtgtcaccctggtttcagcgggactggatgaagtgcccatggcatacaag
gacatcctggatatcatggcccagcagaaagatcttgtggaaaccattgcccggtttgat
ccaaagcttgtcaaaatggccgaacccgacggaaaaggacgaagaaaacagaagcgataa
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