Desulforapulum autotrophicum: HRM2_24920
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Entry
HRM2_24920 CDS
T00861
Symbol
holA
Name
(GenBank) HolA
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03030
DNA replication
dat03430
Mismatch repair
dat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRM2_24920 (holA)
03430 Mismatch repair
HRM2_24920 (holA)
03440 Homologous recombination
HRM2_24920 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dat03032
]
HRM2_24920 (holA)
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_24920 (holA)
Enzymes [BR:
dat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HRM2_24920 (holA)
DNA replication proteins [BR:
dat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HRM2_24920 (holA)
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HRM2_24920 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_gamma3
DNA_pol3_delta
Tipalpha
Chlorosome_CsmC
Motif
Other DBs
NCBI-ProteinID:
ACN15586
UniProt:
C0QGT7
LinkDB
All DBs
Position
2845939..2847201
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AA seq
420 aa
AA seq
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MPEINYNALSKFLASEPLPGFFLAYGEAFLTRKAFDKIIAALVPEERRELSYELLEGVDA
SLANVKERLATYSFEPLLVLGLKNAPLFSAPTAPKVAGFSKQEIDTFQKFIKKPFLEGHF
LVVTTDTADKRRALFKEIKAVGLVIDCSVPKGSRQADKTQQSAILRQIMEGTLNATGKGI
DGDAFAMLVDRTGFDPSTLSDNLEKLVSFIGERVSITVQDVQKVVKRTRKDAIFELTNAV
CDRNAGTALFYLKSLLNAGFHPLQIVMALSNQLRKLVLVKFFIERSRQRGIPCWQPNSPY
NRFKQHTMPMIEQADAEITATAENWDRTLAGHAAPTPAGKSGKPKTNKNLTDLLIAPNKN
NTYPVYHTFLKTDNFSLAELKQAITRLSEVDMKMKRSANDPEIVLDNLILWLCTKGEKNA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaattaattacaatgcactttctaaatttcttgcatctgaacccctgccgggg
ttctttcttgcctatggcgaagcgttcctcacccgcaaggcctttgataaaatcattgca
gccctcgtacccgaagaacgacgggaactatcctatgaacttttagagggggttgacgca
tcccttgccaatgtcaaagaacgcctggccacctactcgtttgaaccgctgctggtcctg
ggactgaagaatgcccctcttttttctgcccccaccgctcccaaagtggcgggattttcg
aaacaagagatagacaccttccagaagttcattaaaaaaccttttttggaaggtcatttc
cttgttgtcacaaccgacaccgcagataagcgccgggctcttttcaaagagataaaggcg
gtgggtctggtgattgactgttcggttcccaaaggaagtcgccaggccgataaaacacag
cagtccgccatcctgcgtcagattatggaaggtactctcaacgccacgggcaagggcata
gacggggacgcctttgccatgcttgtggaccgtaccggctttgacccgtcaaccctgagt
gacaaccttgaaaaactggtctcattcatcggcgaacgggtctccataacagttcaggat
gtgcagaaggtggtaaaaagaacccgaaaggatgccatatttgaactcaccaatgcagta
tgcgaccgcaatgcaggcacagctcttttttatcttaaatcccttttaaacgcaggcttc
catccgctccaaattgtcatggccctgtcaaaccagctcagaaaacttgtccttgtaaaa
tttttcattgaaaggtcccggcaaaggggaatcccctgctggcaacccaactccccctac
aaccggttcaaacagcacaccatgcccatgattgaacaggcagatgcagagattacagca
acggccgaaaactgggacaggacccttgccggtcatgcagcgcccaccccggctggaaaa
tccggcaaacccaaaaccaataaaaacctgacagatcttttaattgcccctaacaaaaac
aacacctatccggtgtaccatacctttttgaaaacagacaatttttccctggctgagctg
aaacaggcaataacccggctcagcgaggtggatatgaagatgaaacgctcggccaatgac
cctgaaattgtgcttgacaacctgattctctggttgtgcacaaaaggagaaaaaaatgcg
tag
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