Desulforapulum autotrophicum: HRM2_26790
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Entry
HRM2_26790 CDS
T00861
Symbol
holB
Name
(GenBank) HolB
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03030
DNA replication
dat03430
Mismatch repair
dat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRM2_26790 (holB)
03430 Mismatch repair
HRM2_26790 (holB)
03440 Homologous recombination
HRM2_26790 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dat03032
]
HRM2_26790 (holB)
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_26790 (holB)
Enzymes [BR:
dat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HRM2_26790 (holB)
DNA replication proteins [BR:
dat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HRM2_26790 (holB)
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HRM2_26790 (holB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DNApol3-delta_C
Motif
Other DBs
NCBI-ProteinID:
ACN15773
UniProt:
C0QI37
LinkDB
All DBs
Position
3058723..3059760
Genome browser
AA seq
345 aa
AA seq
DB search
MQFHDQPDTCLSIKGGVNLPQDLVALLATLKIPNALLFVGNPDLGKVETALAFARALNCQ
GEKRNDGLACDQCRSCKKILSSMHPDIICVAPVKERIKISQIREIYGQIKAKPHEAKFRM
VLIQGAEAMNPEASNALLKILEEPPERTFFILTTERTDGLLPTILSRCRQVTFSPMDQGK
IEQILVRDHGIDTTTAGIAASWSQGSLQKALKFTGIVKSDDTTDWPERRRWMITAISTLI
RGANPGVALLLAEKINQNPELLGGTLAILESFFRDMVVFKYNTEKIINSDFQTLLTETDS
GISTQRVLSWITELHHVEKKIKANAGIRLTLEAFLFKLIPARQLA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcagttccatgaccagccagatacctgtctcagtatcaagggtggggttaacctgccc
caggatcttgtagccctgcttgcaacacttaaaattcccaatgcacttttgtttgtaggc
aacccggatcttgggaaagttgaaacggcccttgcctttgcaagggccctgaactgccag
ggagaaaaaaggaacgacggactcgcctgcgaccagtgcaggtcatgtaaaaagattctt
tcgtccatgcatccggatatcatctgtgtggcccctgtaaaggagcgaatcaagatctca
cagatcagggagatttacgggcagatcaaggcaaagccccatgaggcaaagttccgcatg
gttctgattcaaggggccgaggccatgaaccccgaagcttcaaatgccttgttaaaaatc
cttgaagagccaccggaacgtacttttttcattctgacgacggaacgaaccgacggtctt
ctgccaaccatcctgtcccgttgcagacaggtgacattttcccccatggaccagggaaaa
atcgaacagatcctggtcagagaccacggcattgacacaactacggcagggattgcggct
tcatggtcccagggaagccttcaaaaggcccttaaatttacaggtattgtgaagagtgat
gacaccacggactggccggaaagaagaagatggatgatcacggcaatttccacgctgatc
cgcggtgccaacccaggagtagccctcctccttgcggaaaaaatcaaccagaatcctgag
cttctcggtggaaccctggccattcttgaaagttttttcagggatatggttgtgtttaaa
tacaataccgaaaagataatcaattcagactttcaaacccttttaaccgaaacagattct
gggatttcaactcaaagggtcctttcatggatcactgaactccaccatgttgaaaaaaaa
atcaaggccaatgcaggcatccgattgaccttggaggcttttttgtttaagcttatacct
gccaggcaattggcctga
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