Desulforapulum autotrophicum: HRM2_30450
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Entry
HRM2_30450 CDS
T00861
Symbol
sbcB
Name
(GenBank) SbcB
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HRM2_30450 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_30450 (sbcB)
Enzymes [BR:
dat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HRM2_30450 (sbcB)
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HRM2_30450 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HRM2_30450 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HRM2_30450 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Exonuc_X-T_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ACN16128
UniProt:
C0QKN8
LinkDB
All DBs
Position
complement(3462574..3463989)
Genome browser
AA seq
471 aa
AA seq
DB search
MKTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHR
LTPEDLKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQYA
NDCARMDLLPIATLYRIFKPDGIHWPVIDDKASMRLELISEKNNLVQSGRAHDAMTDVEA
TLALARRLSGQKRMWNYCLDFFDKKNDQARLDAVDEVFQSIFGRHRLCIMVSVSFGSDLT
YMAPVLSLGHSTPYANQSLWLRLDKELVLPFKPDSGDGPFVLRKRYGEAKIVLPSLDRFW
NRLTPSQHQVCEKNIAMLKANQDEFQKLVIHHRSFKYPFVPDLDLDASLYQDGFFSSVEK
KEMGVFHRAINNGEMGVCETLVSPRVKGLAQRIVLRNFYEQAAPEVRAGHDRYMVKIRGP
LGDDPVKGYRNDLKFTCDMAAQELASVRSAQGLDADQKAILDWLDAHIKSM
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacttttcttttctatgatattgagacaagcggactcaatcccgcctttgatcag
attctcacctttgccgccattcgaacggacttggaattaagggagatagatcggacgtcc
atagtcatatcccttcgaaacgatatcgttccttccccgggtgcatttatcacccaccga
cttacccctgaagatttaaaagacggactatgtgaataccagggcgtagcccttattcac
cggctgttaaatacgcctgataccatcagtatcggttacaactcccttgggtttgatgac
gaattcctgcgattcgccttttatcgaaatcttcttgacccctacacccaccagtatgcc
aatgattgtgcccgaatggatctgcttcccattgccaccctttatcggatttttaaaccc
gatgggatccattggcctgtaatcgacgataaggcttccatgcgccttgaattgatcagc
gaaaaaaataatctggttcaatccggcagggcccacgatgccatgaccgatgttgaagca
acccttgcccttgcccgacggctttcgggacaaaagcgcatgtggaactattgtcttgat
ttttttgataaaaagaatgaccaggcaagactggatgccgtggatgaggtgttccagtct
atatttggtcgacacaggctctgtatcatggtctcggtatcgtttggcagtgatttgacg
tacatggcaccggtgttgagccttgggcactcaaccccttacgccaaccagagtctctgg
ctcaggcttgacaaggagctggttttgccgtttaaacctgattcaggcgatggacccttt
gttcttcgaaaacgatatggcgaggcaaaaatcgtgctgccttccctggatcgtttctgg
aatcggcttaccccctcccagcatcaggtttgtgaaaaaaatatcgccatgctcaaagcg
aaccaggatgaattccagaagcttgtcattcatcacaggtcgtttaaatatccctttgtg
ccggatcttgaccttgatgcctccctttatcaggacggttttttttccagtgttgaaaaa
aaggagatgggcgttttccacagggcgatcaacaatggggaaatgggcgtttgcgaaacc
ctggtttcgccccgggttaagggccttgcccaacggattgtgttgagaaatttttacgaa
caggctgcccccgaggttcgtgccggccatgacaggtatatggtgaaaattcgtggtccc
ctcggagatgaccctgtgaaggggtatcggaacgacttgaaattcacctgtgatatggcc
gcccaggagcttgcctctgtcaggtcggctcaagggcttgatgcggatcagaaggctatc
cttgactggcttgacgcccacataaaatccatgtga
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