Desulforapulum autotrophicum: HRM2_35440
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Entry
HRM2_35440 CDS
T00861
Symbol
deaD
Name
(GenBank) DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRM2_35440 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dat03019
]
HRM2_35440 (deaD)
03009 Ribosome biogenesis [BR:
dat03009
]
HRM2_35440 (deaD)
Enzymes [BR:
dat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRM2_35440 (deaD)
Messenger RNA biogenesis [BR:
dat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRM2_35440 (deaD)
Ribosome biogenesis [BR:
dat03009
]
Prokaryotic type
rRNA helicases
HRM2_35440 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACN16609
UniProt:
C0Q9A4
LinkDB
All DBs
Position
complement(4005853..4007703)
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AA seq
616 aa
AA seq
DB search
MASESSREPDCNEPGFSESGFSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLL
GQAQTGTGKTAAFALPLLSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVL
PVYGGQAYAGQLNQLKRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFI
DDVEWILEQTPPGRQVALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMV
KGTHKLDALTRILEAETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERT
IDRFKKGKIDILVATDVAARGLDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAIL
FVSPRERWMLKVIEKTTRQQIEMMKLPSTEAINDKRIADFNQSITDTLASKELDLYLELM
EQYRQEHDVPALDIAAALALMLQGEKPLLLSSPKKVSVVSEKPSRTEDKFKDKPLRKDEK
SRDKAFRKDEKPKDKPFRKDDEKSRDKPSPKAAKLADKPAGKKKASPKKAAALPPGKGME
RFRIEVGDVHGAKPKDIVGAIANEAELDGKFIGAITIEHDHSFVDLPIGMPATIFELLKK
VRVAGQQLKISRSTKA
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgaaagttcccgcgaacccgattgcaatgaacccggtttcagcgaatccggt
ttcagcgaaatgggtttgatcaaacccgtattaaaagccctggacgacctgggttatgaa
acgcccaccaccatccaggccgaaaccattccctatatcctggccggtcgtgatctcctg
ggccaggcccagacaggaacgggcaagactgctgcattcgcccttccgcttctgtcccgc
attgacattaaactcaagaagccccaggtgctggtgcttgcccccacaagggagcttgcc
atccaggtggctgaatcctttaagggttatgcggcccgcatcaaggggtttaatgtcttg
cccgtctacggggggcaggcatatgcagggcagcttaaccagttgaaacgaggggttcat
gtgatcgttggcaccccgggacgactcatggatttgatgaagcgcggtgtcctggacctg
acacagatcatgacccttgtcattgacgaggccgatgagatgctcagaatgggatttatt
gatgatgtggagtggattctcgagcagacccctcccggccgtcaggttgccctgttttcg
gcaaccatgccagcacccatcaagaagatagcaataaagtatctcacggatcccaaggat
gtctttatccggctgagaaccgccactgccgacaccattcgccagcggttctggatggtc
aagggaacccacaagcttgacgccctgacccgaatccttgaggcggaaacctttgacgct
atcattgtttttgtccgtaccaagacggcaacggtggaacttgcggagaagctcgaagca
agggggtatgctgcggtggccctgaacggggatattgctcagaaggcaagggaaagaacc
atagatcggtttaaaaagggaaaaatcgacattcttgttgcaacggatgtggcggcccgg
ggacttgatgtggaaagggtgagccatgtgatcaactatgacatacccaacggtgctgaa
tcctatgtccaccgaatcggcagaacaggccgtgccgggcgtgccggagacgccatactt
tttgtttcaccaagggaacgctggatgctcaaggtgatcgagaaaaccacccgccagcag
atagagatgatgaaacttccctcaaccgaagcgatcaacgataaacgtattgccgatttt
aaccagagcataacagatacgcttgcctcaaaggagctggatctctatctggaactcatg
gagcagtatcgccaggagcacgacgtgccggccctggacattgctgcagcccttgccctt
atgctccagggggagaaaccccttcttctttcctctccgaaaaaagtgtcggttgtttct
gaaaagccttcccggacggaagataaatttaaggataagcccctccggaaggatgagaaa
tccagagataaggcctttcggaaggacgagaagcctaaggataagcctttccggaaggat
gacgagaagtccagggataagccttcccccaaggcggcgaaattagcggacaaaccagca
gggaaaaaaaaggcatctcccaaaaaggccgcggctctgccacctggaaaggggatggaa
cggtttcggatcgaagtgggtgacgtccatggcgccaagccaaaggatattgtcggtgcc
attgccaatgaggccgagcttgacggaaaattcataggtgccataaccattgaacacgat
cactcgtttgtggatttacccattggtatgccggcgactatttttgagcttttgaaaaag
gtgagggtggcaggtcagcaactcaagatttccaggagtaccaaggcctaa
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