Desulforapulum autotrophicum: HRM2_36320
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Entry
HRM2_36320 CDS
T00861
Symbol
rpoB
Name
(GenBank) RpoB
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HRM2_36320 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dat03021
]
HRM2_36320 (rpoB)
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_36320 (rpoB)
Enzymes [BR:
dat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HRM2_36320 (rpoB)
Transcription machinery [BR:
dat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HRM2_36320 (rpoB)
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HRM2_36320 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
HTH_92
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACN16697
UniProt:
C0Q9X9
LinkDB
All DBs
Position
complement(4083140..4087345)
Genome browser
AA seq
1401 aa
AA seq
DB search
MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSV
LPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSI
RDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIYTA
RIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD
GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDI
IGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYVDTYSSDSMRKTLAV
DKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRLGMST
GIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRMER
AIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSAL
GPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYRI
AKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKNDIEFM
DVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDSG
VAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVKK
GDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVHV
EEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITPKGET
QLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLEI
EKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISLT
DLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIKINVA
MKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGVPSRMNVGQILEI
HLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSHYTVE
KSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLISYAG
LDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKA
QFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVKGQNVLEPGMPESF
RVLTKELQSLGLDINLLEGKK
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggagccttttggcaagcaagcgcatacgaaaagaatttggcagtaagagcagg
gtcgtcgacattcctgatctcatagggatgcaacgcacctcttttgaacgtttcctccag
agaaatgtaccgcctgaagaaagggaagatatcggaattcatcttgtattcaagtccgtt
cttcctattaaagacttcacaggtacctcatcccttgaatatgtctcgtattcgtttgga
gagacaaagcattccatgaaagagtgcatcagtcgagggatgacctatgaaattcccgtt
aatataaccgtaaggctcgttgtttatgatgtggacaaggatgcaggggttacctccatt
cgggacatcaaagagcaggaaatttatttcggaaccattcctttgatgacgaaacgtggt
acttttataattaacggtaccgaacgcgctgttgtcagccagcttcacagatcctcaggt
gtgtttttcgaccatgacaagggaaagagtcattccagcggaaagattatctataccgct
cgaatcatccctgtccggggatcctggatcgatatggagatcgaccccaaggatattgtt
aatatccgcatcgaccgacgtcggaaatttcctgtgaccatcctttttaaggcatttggt
tacaccaatgaagacatcttaagcttcttttataaaaaggagcaaattgtaaaaaaagac
ggtattctgttcaaggagttcaaccccgataacctcaaaaggaaccgggcaagttttgat
atccttgatcctgaaaccggtgaggcagttgttaaaaaggggcggttgtttaccctccgg
gccctgaagcaactccaggttgccggtctcaagtccatacccatcagtgaggaggacatc
atcggcagggggtttgccacttccgttgtccatccagaaacagaggagatccttgcaaag
gcgggttcactgattgaccccgaggtacttgagaagattgctgatgccgggatcactgag
ttcagcattctttacgtggacacctacagttctgactccatgcgcaagacccttgccgtg
gacaaggttaccagccgtgcagaggccctgatcgagatttacagaaggctgaggcccgga
aatccagccacccccgaggttgcccaggattttatcgatcatctgtttttcaagccggct
tattacgacctttccaatgttggccgtctcaagatgaaccatcggctgggcatgtcaacg
ggcattgacgtgagaacccttcgaagggaggatattctgcttacagctgccacccttgtg
gagctcaaggatacccagggtgccgtggacgacatcgaccatctcggaaatcggcgtgtc
cgggcggttggtgaacttcttgaaaaccagtacaggatcgggcttgtcaggatggagcgg
gccatcaaggaacgcatgagcatgcaagaggttgatgccatgatgccccacgaccttgtc
aatccaaaacctgtttcagccgtagtaagggagttcttcggcacaagtcagctctcccag
ttcatggaccagaccaatcccttgtccgagaccacccataagcgacggctttcggccctg
ggaccgggtggccttacacgggaacgtgcaggctttgaagtcagggatgttcatccatcc
cattacggcaggatctgtccaattgagactcctgagggacccaacatcgggctcattgta
tccctttgtacctacgcaagggtcaacgattttggttttattgaaaccccttacaggatt
gcaaaagacggtgtggtctcaaaacagattacccatctttctgcatttgaggaaaaagaa
catcccatcgcccaggcaaacgctgtgcttgatgatcaaggtcatctgatgaacgacctt
gtcacctcacgggtgggtggagagtttgagatggttgctaaaaacgacattgagttcatg
gatgtctctccgaaccagctggtttcagtttccgcctcgttgattccctttctggagaac
gatgatgcaaaccgtgcactgatgggttctaacatgcagcgtcaggcggttcccctgatt
cgaagcgaggccccccttgtgggcactggcatcgaaggggtggttgcccgggattcaggt
gtggcaattgtggctgagcacgatggtattgttgttgatgtggatgccaaacggattgtt
gtcaaaaatactgaaaacggtaaaggttcagatgacaggaccgtgaccatatacacggct
tccaagtttgttcgatccaaccagaatacctgttttaaccatcgacccatcgttaaaaag
ggtgacgccgtaagaaaaggcgaggtcatcgccgatggtccctcaactgaaatgggtgag
cttgcccttggaaagaacgttactgtggctttcatgccctggggcggatacaactatgag
gattccatccttgtaagtgaacgactggtcaaggaaggggtatacacttcagttcatgtg
gaggaatttgaggttgttgcccgggacacaaagcttggcaaggaggagatcacccgtgat
attcccaatgccggggaagaggcattaaaagatctcgacgacagcggtatcatccgcctg
ggtgccgaggtcaagcccggtgacatccttgtgggcaaaatcacgcccaagggggaaaca
cagctgagtcccgaggaaaaactgcttcgcgccatttttggggaaaaagcaggtgacgtt
aaagatacctccctcagagtaccccccggggttgagggggttgtgaccgctgccaaggta
ttttcccgaaggggacttccaaaggatgaccgcacaagactgattgaagatcttgagatt
gaaaagcttgaaaaggatcgggacgatgaagtgcgtatcatcaccgagaccatccaggag
cgtcttgaagacatcctcgcaggtcaggcgcttcaggctgttgttaaaaaaggtaaaaag
gtagttgtcccggcaggaacgctggtaacccgtggcctgtttgagggcatttctctaacc
gatttaatgggcctgactgttgaggactcatcgcttacggaaatggcccatgtcatcctt
gaaaaggctgagacccagatcaaaaaagccagggaaaacttcaacaaccaggcatcccgg
tatgaaaaaggcgatgatctgcctccaggtgtgctcaagctgatcaagatcaacgttgcc
atgaaacgtgttttgtcggtgggggataaaatggcaggccgccacggtaacaagggcgta
gtctccaggattctccctgtggcagatttaccttactttgaagacggcaggaccgtcgac
atggtactcaatccccttggtgtgccgtcaaggatgaacgttgggcagattcttgaaatt
cacctggggtgtgctgccaggggccttggtcgccagatcgatgatctcatctatgagaaa
aagaccgacgaactgagggccagaattaagagaattttcacaactcctcttataaaaacg
ggcgaacgggcaaacaaggataaaacacattatgatttttcctcccattacaccgttgaa
aagagtatggccaaacggaccaacgaggaagagattcaattcgttgataccatagaccat
atggatgacaccgagttccttgaatttgcctccatgtataaaaacggggttcacatggcc
acgccggtttttgatggtgcggccgagagcgagatcaagtcgctgatcagctatgccggt
cttgatccgtcgggtcagtcgaccctctacgacggtcgcacgggtgagccctttgacaag
cccattaccgtgggtatcatgtacatgctcaagctccatcaccttgtcgatgacaagatt
catgcccggtcgatcggaccctactcccttgtgacccagcagccgttgggcgggaaggcc
cagttcggtggtcagcgtcttggagagatggaggtttgggccatggaagcctatggcgcc
gcccatgcgcttcaggagtttattacggtaaaatcagatgatatgacgggaaggacacgc
atgtatgaaaagatcgtcaaaggacagaatgttcttgaacctggaatgcctgaatctttc
agggttcttaccaaagaactccagagtctgggtctggatataaaccttttagaagggaaa
aaataa
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