Desulforapulum autotrophicum: HRM2_37620
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Entry
HRM2_37620 CDS
T00861
Symbol
hrpA
Name
(GenBank) HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dat
Desulforapulum autotrophicum
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dat03019
]
HRM2_37620 (hrpA)
Enzymes [BR:
dat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HRM2_37620 (hrpA)
Messenger RNA biogenesis [BR:
dat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HRM2_37620 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
NACHT
T2SSE
ResIII
PhoH
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACN16820
UniProt:
C0QAN7
LinkDB
All DBs
Position
complement(4221117..4225118)
Genome browser
AA seq
1333 aa
AA seq
DB search
MKRVKKIERLLPETMCADRYCLVQDVQRLKRLIKQNTPDRAGLQSRIAALEGRVDKSRQE
REQRQASMPDIAYLPELPITGKKDEIIHALKFHRVVIISGETGSGKTTQIPKFCMAAGRG
AAGKIGCTQPRRIAAITVAARIAEELGQLPGGVVGHKIRFDDRSSKDSIIKIMTDGILLA
ETQHDPFLNEYDTIIVDEAHERSLNIDFTLGILRNLVRKRPDLTLVVTSATIDTEKFSKA
FDNAPVIEVSGRMFPVELRYAPIDDPDNDDLDDQGYVEAAAGAVDEIQRQSRTGDILVFM
PTERDIEETIELIQGRKYPGTLVLPLFARLSARDQARVFSRGVGRKIIVSTNVAETSLTI
PGIKYVVDSGLARILHYSPRTRTTALPVSPISRSSANQRMGRCGRVANGICIRLFSEDAF
ESRPLFTSPEILRSNLAEVILRMISLKLGNVAAFPFIDPPAPKSIKDGFDTLVELGAIQQ
RRGKNNQRGGYALTTRGRVMAKIPVDPKLSRILLEADHNGCLDEAVVIVSALSIADPRQR
PKDKVQHADQMHAAFKDPSSDFVTLLNIWKAYVAAEHSLKTRNQVRRFCKDNFLSFRRFR
EWGDIQHQIRSVLKEHGITRSNTDSTVTKVGTKGLKAKAFEIGGPFYTALHKSILAGYLA
NIAQKKEKNNYTATKGRAATIFPGSGLYNSGGSWIVAAEFVETTKLFARGVAIIDPQWLE
ETGQELLTRTWSTPRWEKQRGEVVATEQISLFGLVIVPERTVAYGKINPREAGEIFIRQA
LVEQEVARPLGFMVHNQALIDELRQVEEKTRRRDIVVTEDDMFLFYQQRLDQDFSNLATF
TRFLKEQGSDLFLRMTLEDLQQRSPDRDELLKFPDSLEMGGGSFRLEYGFQPGAETDGVT
VKVPATSAASVSVSTIDRLVPGLLTEKIAALIKALPKRFRVRLVPVADTAAMIADSLPES
DRPLFVELSHFIKQRFKVDIPPSAWSDATLEEHLKIRISITDAKGKEVAASRENDLLDKY
AKGHGSNDLLFEDAKRRLERTGVTSWDFGDISSPVLLGQGQELSYNVYYGLQSEEQGVGL
RLFKSHAEARRSHVAGVEKLSTICFEADFKALKKDVKKWTLLRPRTSKFGGWERFQNALV
SCVFRELFSRDVRTPKAFLELADKHLPLVYRHGEELMKTMVTLFDEHDRTLTLLKNLFLK
SGNRPTVLAMAQTLEKDLAALLPELFPSLYDFTRIKKLERYVAAIRIRAERGAVEPVKDS
VKAGLVAEHTLKLNNLVATLSKESSREKVEAVEAFYWMIEEYKVSVFAQELGTLVKISPK
RLNTMWREIQAMI
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagagtcaaaaaaattgaacggctgttgccggagaccatgtgtgccgatcggtac
tgtctggtccaggatgttcaacggctgaaacggctgatcaaacagaacaccccggaccgt
gccggccttcaatcccggatagctgcccttgaagggcgggtcgataaatccaggcaggag
agggaacaaagacaggcgtccatgccggatattgcctacctcccagaactgcccatcacg
gggaaaaaagatgaaatcatccacgccctgaagttccatcgggtggtgatcatctcaggc
gaaacagggtcaggaaaaaccacccagattcccaagttctgcatggccgcaggcaggggg
gctgccggcaagatcggctgcacccagccaaggcgcattgcggccatcacggttgcggca
agaatcgcagaagaactcggacagttgccgggtggtgttgtggggcacaagatccggttt
gacgacagatcgtcaaaggattccatcatcaagatcatgaccgacggcattttgctagcc
gagacccagcatgatccatttttaaacgaatatgacaccatcatcgtggacgaggcccat
gagcggagcctgaacattgattttaccctggggattctgcgaaatctggtcagaaaaagg
ccggatcttaccttggttgttacctctgccaccattgatacggaaaaattttccaaggcc
tttgacaatgcgccggtgatcgaggtgtcgggccgaatgtttcctgttgagttgaggtac
gcacccattgacgaccctgataacgacgacctggatgaccaggggtatgtggaggccgct
gccggggccgtggacgaaattcaacgccagtccagaacaggtgatatccttgtgttcatg
cccacggagcgggacattgaggaaaccatcgaattgatccagggccggaaatatccaggc
acccttgtgctgcccctttttgcaaggctttccgccagggaccaggccagggtgttttcc
cggggggtgggaagaaagatcattgtttcaaccaacgtggctgaaacctcgctgaccatt
cccggcattaaatacgtggtggattcaggtcttgccagaatacttcactattcgccacgg
acccgaaccacggcccttccggtttctcccatctccaggagcagcgccaaccagagaatg
ggccggtgcggcagggtggctaacggcatctgcatccgtctgtttagtgaggatgcgttt
gagtcccggcccctctttacctcgcccgagattctgaggagcaaccttgccgaggttatt
ttgcggatgatttcgcttaaacttgggaatgtggcggcctttccctttattgatccacct
gcacccaagagcatcaaggacgggtttgacacccttgtcgagcttggcgccatccagcag
cgaaggggtaaaaacaatcagcggggggggtatgcccttacgaccagggggcgggtcatg
gcgaaaattcccgtggatccaaagctgtcacggatacttctcgaggcagaccacaatggc
tgccttgacgaggccgttgttatcgtttcggccctttccattgccgatccccgacaacgg
cccaaggataaggtccagcatgccgatcagatgcacgcagcctttaaggacccctcatct
gactttgtgacgcttttaaacatctggaaggcctatgtggcggctgagcactccctcaag
acccgcaaccaggtaagacgtttctgcaaggataacttcctttcgttcaggcggttcagg
gagtggggcgatattcagcaccagattcggtcggtgctcaaagaacacggcatcacccgg
agcaataccgatagcacggttaccaaggttggaacaaagggtctcaaggcaaaggcattt
gaaattggtggtcctttttatacagcccttcacaagagtattcttgcgggttatctcgca
aacattgcccagaaaaaagagaaaaacaattacacggccacaaaggggcgtgccgcgacg
atttttccaggttccggcctgtacaacagcgggggcagctggatcgttgccgccgagttt
gtcgagaccacaaaactctttgcaaggggtgttgcgatcattgatccccaatggcttgag
gagaccggccaggagcttttgacccggacctggtcaacgccccggtgggaaaaacagagg
ggggaagtggtggccacggagcagatttccctgtttggccttgtgattgtgccggaacgt
accgtcgcctatgggaaaattaatcccagggaggccggagaaatttttatccgtcaggcc
cttgtggaacaggaggtggcaaggccccttgggtttatggttcacaaccaagctttgatc
gacgagcttcgccaggtggaggagaagacccggcggagggacattgttgtcaccgaagac
gacatgtttttgttctaccagcagcgcctggaccaggatttttccaaccttgccaccttt
acccggtttctcaaggagcaaggatcggatctgtttctgcgcatgacccttgaggacctc
cagcagcgatcaccggacagggacgaactgttgaaatttccagactcacttgagatggga
gggggaagctttcgccttgagtacgggtttcagccgggtgctgaaacagacggggtaacg
gtaaaggtgcctgcaacatcggcagcctcggtcagtgtctccaccattgaccggctggtt
cccgggcttttaacggaaaaaatagccgccctgatcaaggctcttcccaaaaggtttcgt
gtcagactggtacctgtggcagacacggctgccatgattgccgattccctgcccgagtct
gaccgacccctttttgtggaactcagtcattttatcaaacagcggtttaaggtggatatc
cctccgtctgcctggtcggatgccacccttgaagagcatctgaagattcgcatctccatc
accgacgccaagggtaaagaagtggctgcctccagggaaaatgatctgctcgacaagtat
gcaaagggccatggctccaatgatctgctgtttgaagatgccaaacgacgcctggaacga
accggggtgacctcctgggattttggagacatcagttcccctgttctcctgggtcagggg
caggagttgtcctacaacgtctattacggattgcaatctgaagaacagggggtgggactg
cggttgtttaaatcccatgccgaagcccgcagatcccatgttgcaggtgttgaaaagttg
tcgaccatctgttttgaggccgatttcaaggccttgaaaaaggatgtgaaaaaatggacc
ctgctcagaccccggacttcaaagttcggcggatgggaacggttccagaacgcccttgtc
tcctgcgtctttcgtgagcttttttccagggatgtcaggaccccaaaggcctttcttgaa
ctggcagacaaacaccttccccttgtttaccgccatggcgaggaattgatgaaaaccatg
gtcaccctctttgatgagcacgacaggaccctgaccctgctcaaaaatctgttcttgaag
tccgggaaccggcccacggttcttgccatggcccagacccttgaaaaggatcttgcagcg
cttttgccggaactgtttcccagtctttatgattttacgagaataaagaaacttgagcgt
tacgtggcagccatcagaatccgggccgaacggggagcggtggaaccggtcaaggatagt
gtcaaggccggtctggttgccgaacacaccctgaaactcaataacctggttgcaaccctt
tccaaagagtcatccagggaaaaggtcgaagctgtggaggcgttttactggatgattgag
gagtacaaggtttccgtgtttgcccaggagctcgggaccctggtgaagatttctccgaaa
aggctcaacaccatgtggcgggaaatccaggccatgatctga
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