Desulforapulum autotrophicum: HRM2_47180
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Entry
HRM2_47180 CDS
T00861
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRM2_47180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dat03019
]
HRM2_47180
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_47180
Enzymes [BR:
dat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HRM2_47180
Messenger RNA biogenesis [BR:
dat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRM2_47180
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HRM2_47180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACN17767
UniProt:
C0QHA8
LinkDB
All DBs
Position
complement(5313684..5318906)
Genome browser
AA seq
1740 aa
AA seq
DB search
MAEPVLDTDLPGKDVKPVEEWVSRIFGKFKHVLIIDFEAVPKGDVFHVGAVFNGSTFERK
GIKDTRAALGQLSEFSSGADYILGHNIINHDLVLAKEAFPDAPILRLPVIDTLYLSPLAF
PENPYHKLIKDYKLIKNSKNNPVADAHLTWAVFEDQVTAFSVLNQEDPGLISFYAFAFEP
FCSKNPGMGMTGIFDLFHALSESVPDTDRARQIFLAICREKICSTAFETVWEEFCHDPQK
RPVLAYVLSWLRVSGGNSIIPPWVRHEFPGISDIITRLRYACGSSNCACCRANNDAEKLL
KRYFGFDQYRRLPDGRKLQQEIIEANLGGHPLLGILPTGGGKSICYQIPALHRYHRTGEL
SVVISPLKALMKDQVDNLNKTCGMEVAGAINGSLTLPERGDVMEKVRLGDIGILYISPEQ
LRNFSVAELISSREVGCWIFDEAHCLSKWGHDFRPDYLNVADFIVEHNKQAQCPPLIAAF
TATAKKDVVEEISTHFAEKLGIDMVCFISEVQRENLNFQVWPVTTAEKHDVIFNCLKESL
SDTSSGAIVYCASRKKTEVLSRFLNERGIESYPFHAGRSEPDKRNTQDDFVAGKISVICA
TNAFGMGIDKKDIRLVIHADIPGSLENYLQEAGRAGRDTAPADCILLYEQEDIENQFSLN
AYSKLSLKDIKKILAVLKKRGAKTPEIVITPGEIMRLIGYSDSVEDDGRARIGVSWLERK
GFLKRSFNQTLFFNGKPLVRDMEAAEEKIAALNLSQMTASVFRTILLTLFNADKDSILSA
DVICANLGKIENLPEEYLDPRFVIGLLSQMADVGLIKEGALMTAFVRPRGQGSSSRLLEA
VMEIETQMLALMAELSPDAGISPDTADVIHLRLMSQRLKDKGFDQVNTDVVGRLLKALAG
DRGESQAKSLKIAGRKGAEQQMVYVKFPWQEIRQRMQLRHNCSRLCLATIISALEKPLQH
GQAQVMSEFFLSHITREMQSDVFLSGYRGDHRTLIEQSLLFMHDMKVITLQNGLGVFRQA
MNLTLLPESLKRQYTQGDYEPLSHHYAQKNVQVHVMEKYARLGLEKIKTALGFVSDYFSS
SYDTFIQQYFPREKTLIQTAMTAEAYKKIIQSLEDHTQEAIVAASPEKNILVLAGPGSGK
TRTIVHRCAWLIKAKSIDPASILVLCFNHQAMIELRKRIRALTGRSANAVTAMTYHGFAM
RLTGRSFLAKQTGPASGKKTMGFDAIIDEAVEMLNGEREIVGIDQSETRQILLAQYRYLL
VDEYQEIDDRQYRFISALTGRLEQDRDTRISIMAVGDDDQSIYGFRNANLRFIKQFQQDY
GAKTVYLVENYRSAYPIVQASNAFIALNKNRMKTDWPCRINGKRRSQEHEAHTIKTHELV
QVVQVKDIASQAVFVAQKIKQLMADNPEMDYNDVAVVARKGMAYPSLVSLRMALAREGIP
FCHSIKSGAGFPLFRIREIQVFLQYLENHKNESRTPLDLRQAVLDQFKQKNPWTDQIGQI
LESWCAVNSDMEISIDRARAFFLETLLEEKREHKTGTGVFLGTAHSVKGMEFPFVFILDG
DWTQKNIEEERRLFYVAMTRAMKAVHVTRIQGSPNPHVSFLEQHDFAHVTRAEPLAIPGF
NEYLTVSILGMEDLFLSYAGLFARNHPIHGALSALTPMESVILKEKNDQVFIENTRHQTI
ARLSNRGTAKWQGRTQTILHARVLGIINRKQTDGQDYDGKHEKIDSWELPIIEILHKKHI
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacctgtcttggatacagatcttccgggtaaggatgtcaaaccggttgaggag
tgggtcagccggatcttcgggaagtttaagcacgtccttatcatcgattttgaagcggtt
cccaaaggggatgtattccatgttggtgcagtctttaacggcagcacctttgaaagaaaa
ggcatcaaggatacccgggctgccctggggcaattgtcagagttttcatccggggccgac
tatatcctggggcacaatatcatcaatcatgaccttgtgcttgcaaaagaagcgttcccg
gacgcgccgattttgcgtctgccggtcattgataccctttatctgtcccccctggcattt
ccggaaaatccctatcacaaactgataaaagattacaaattgatcaagaacagcaagaat
aacccggtggcagacgcccatctgacctgggctgtgtttgaagatcaggtgacggccttt
tctgtgttaaaccaggaagatcctggattgatctcattttatgcctttgcttttgaacca
ttttgttccaaaaatccaggcatggggatgactggcatttttgatctgttccacgccttg
tccgaatctgttccagacacggacagggccagacagatattcctggcgatatgccgggaa
aaaatatgttcaaccgcctttgaaacggtctgggaggaattctgccatgatccccaaaag
agacctgttcttgcctatgtcctgtcctggctcagggtgtccggcggcaattccatcatc
cctccctgggtgcgacacgaatttcctgggatttccgacatcatcacccggcttcggtat
gcctgtggcagcagcaactgcgcctgttgcagggcgaataatgacgctgaaaagctccta
aagcgttactttgggtttgaccaataccgcaggctgcccgacggtcggaaactccagcag
gaaatcattgaggcaaaccttgggggtcaccctttgctgggcattctgcccacgggcggc
gggaaatccatctgctatcagattccagcccttcaccggtaccacaggaccggtgaactc
agcgttgtgatctcaccgctcaaggcgctgatgaaagatcaggtggacaacctgaacaag
acctgcggcatggaggtggccggtgccatcaacggcagccttacccttcctgaacggggg
gatgtcatggaaaaggtaaggctgggtgatatcggtatcttatatatttctcctgagcaa
ttgcgcaatttcagcgtggcagaattgatcagttcaagggaggtgggatgctggatcttt
gatgaggcccactgcctttccaaatggggccatgatttcaggccggattatctcaatgtt
gccgattttattgtggaacacaacaaacaggcccaatgccctccccttattgctgcattt
acggcaaccgcaaaaaaggatgtggttgaagaaatctctacccattttgctgaaaagctt
ggcattgatatggtttgctttatcagtgaagtccagagggagaacttgaattttcaggta
tggccggtgacaacggctgaaaagcatgatgtgattttcaattgtcttaaagagagtctc
tctgacacgagcagtggtgccattgtatattgtgccagcagaaaaaaaacagaagtgctc
agtcgttttttaaatgaaagaggaattgaatcttacccattccatgcagggcgaagcgag
ccggacaaacgaaatacccaggatgattttgtagccgggaagatttctgtgatttgtgcg
accaatgcctttggcatgggcatcgacaaaaaggatattcgcctggtcatccatgccgat
attcccggatcccttgaaaactacctccaggaggcgggtcgggccgggagggatacagcc
cctgcagactgcattctcctgtacgaacaggaagatattgaaaaccagttttcattaaat
gcctattcaaaactttcgttaaaggacatcaaaaaaatcctggctgtgctgaaaaaaaga
ggggcaaaaaccccggagatagtcatcactcccggggaaatcatgcgcctgatcggttat
tccgactctgtcgaggatgacggccgggcaagaatcggcgtcagctggctagagcgaaag
ggctttttaaagcgctcgttcaaccagacactctttttcaacggcaaaccccttgtcagg
gacatggaggcagctgaagagaagatcgcggcattgaacctctcccaaatgacggcaagt
gtgttccgaacgattctgcttaccctgttcaatgcagacaaggactccatattatctgcc
gatgttatctgtgcaaatctgggaaaaatcgaaaatctgcccgaagaatatttggatcca
cggtttgtgatcgggcttttatcccagatggcggacgttggactgatcaaggaaggggcc
ctcatgaccgcctttgtccggcctaggggacagggcagctcatccagactgctcgaggcc
gttatggagattgaaacccagatgctcgcgctgatggctgaactctctcctgatgcagga
atctctcctgacacggccgatgtcattcatctcaggctgatgtcccagcgactcaaggac
aaggggtttgaccaggtaaataccgatgttgtgggcagactattaaaggcccttgccggt
gaccggggagaaagtcaggcaaagagtttaaaaatagccggcagaaaaggggctgagcag
cagatggtgtatgtgaaatttccctggcaggagatccgacaacgaatgcagctgcgccac
aattgttcaagactctgccttgcaacaattatttcagccctggaaaaaccgctgcagcat
ggccaggcccaggtgatgtccgaattttttctttcccacatcacccgggagatgcagtcc
gatgtttttctttccggatacaggggcgatcacaggacgctgattgaacaaagtcttttg
ttcatgcatgacatgaaggtgattaccctgcagaacggcctgggggtgttccgccaggcc
atgaacctgacccttcttcctgaaagccttaaaagacaatatacccagggcgattatgaa
cccctgtcccaccactatgcccagaaaaacgtgcaggttcatgtgatggaaaaatatgcc
cgcctgggccttgaaaagatcaaaaccgccctggggtttgtcagtgattatttttcatcc
tcctatgatacctttatccagcaatatttccccagggagaaaaccctgattcaaacggcc
atgaccgcagaggcgtataaaaaaatcatccagtcccttgaagatcatacccaggaagcc
attgttgcagcgtcccctgaaaaaaatatactggtcctggccggacccggctcgggcaag
acccgaaccattgttcatcgttgtgcctggctgatcaaggccaaatccattgaccccgct
tccatccttgtgctctgtttcaaccaccaggccatgattgagcttcgaaaaagaatccgg
gccctgaccggcaggagcgcaaatgcggtaacggcaatgacctaccacgggtttgccatg
cgcctgaccggccggtctttcctggccaaacagacaggccctgcatcagggaaaaaaacc
atgggttttgatgccatcattgacgaagcggttgagatgttaaacggagagcgggaaatc
gttggaattgatcaatctgagacaaggcagattctgctggcacaataccgctatctcctt
gtggatgaataccaggaaattgatgatcgacaataccggtttatctcggccttgaccggc
cgtcttgaacaggaccgggatacgagaatttccatcatggcggtgggggatgatgaccag
agcatttatggatttagaaatgccaacctgcgtttcatcaagcaattccagcaggactat
ggggcaaaaaccgtttatctggtggaaaattacaggtctgcctatccgatcgttcaggcc
tcaaacgcatttatcgctttaaataaaaaccggatgaaaacagactggccctgccggatc
aatggaaaaagaagatcccaagaacacgaagcccacacgatcaaaacccatgaactggtc
caggtggtccaggttaaagatatcgcctcccaggcggtgtttgttgcccaaaagatcaag
caactcatggcggacaatcctgaaatggattacaatgatgtcgcagttgtcgcccgtaag
ggcatggcctatccgtcgttggtgtccctcaggatggcccttgccagagaagggataccc
ttttgccattcgatcaaaagtggtgcgggatttccattattcagaataagagagatccag
gtgtttctccaatacctggagaatcataaaaacgagagcaggacaccccttgacctcagg
caggcggttctggatcagttcaaacagaaaaatccatggacggatcagatcgggcagatt
ctcgaatcatggtgcgctgtcaattcggacatggaaatatccattgaccgcgccagggct
tttttccttgaaacccttttggaagaaaagcgggagcacaagaccgggaccggtgttttc
ctgggtacggcccacagtgtaaagggtatggaatttccctttgtatttattctggacggc
gattggacacaaaagaatattgaagaagagcggcgattgttttacgtggccatgacacgg
gccatgaaggccgtccatgtcacaaggattcaaggctccccaaatccccatgtgtcgttt
ctggaacaacatgactttgcccatgtcacaagggcagaaccgttggcgatccctggattt
aacgaatatttaaccgtttcgatcctggggatggaagatcttttcctgtcctatgccggt
ttgttcgcccggaaccatccgatccatggggcgctttcggccctcacccccatggaaagc
gtcattctcaaagaaaaaaacgatcaggtttttattgaaaacacccgccatcaaaccatt
gcaaggctttcgaacaggggaacggccaaatggcaggggcgcacccaaaccatcctccat
gcccgggtgcttggcattatcaatcgcaaacagacagatgggcaggattatgatggcaaa
catgaaaaaatcgattcatgggaacttccgattattgagatccttcacaaaaaacatata
tag
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integrated database retrieval system
