Desulforapulum autotrophicum: HRM2_49370
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Entry
HRM2_49370 CDS
T00861
Symbol
recD3
Name
(GenBank) RecD3
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HRM2_49370 (recD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_49370 (recD3)
Enzymes [BR:
dat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HRM2_49370 (recD3)
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HRM2_49370 (recD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
PIF1
PhoH
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_16
AAA_28
Helicase_RecD
AAA
RsgA_GTPase
NTPase_1
ABC_tran
AAA_29
TsaE
HHH_2
HHH
Zeta_toxin
cobW
NPHP3_N
AAA_23
ATPase_2
T2SSE
AAA_5
DEAD
AAA_25
AAA_33
MeaB
NACHT
IstB_IS21
HHH_8
AAA_14
Mg_chelatase
UvrD-helicase
nSTAND1
bpMoxR
SRP54
AAA_7
AAA_18
ORC-CDC6-like
Motif
Other DBs
NCBI-ProteinID:
ACN17985
UniProt:
C0QIP1
LinkDB
All DBs
Position
complement(5574603..5576804)
Genome browser
AA seq
733 aa
AA seq
DB search
MDSATAAGVFKRTMIVLQGTLERITFRNEENHYTIAKIKTRETRDAVVVVGTMPGVNEGE
TLKLTGQWVAHPKYGDQFKVDRFEVTLPATVAGIRRYLGSGIIKGIGMAMAKRIVEQFEE
RSLEVIENEPERLREIPGIGKSKADLITRAWDKHHAVRKVMRFLQDHDVGIAHASAILKY
YGTDSLNILKHNPYSVSKDVPEAGFEVADAIALKAGFKPDDPERIKACLLFLLCKKECDG
HVFAEFEALNLGCESLTGAGREDVEKALGALADAGEVVVEQDQVYLKRLHMAEKGIAERI
RAMLCVPINPVDLSDEAITMEVATRLAVKLSQEQIDVVKQVMAHRVVVITGGPGTGKTTL
IRAVCAVLKKLRKTVTLAAPTGRAARRLSQVTDKKASTLHRLLLCDPDTGEFARNLSNPL
DSDVVIVDEASMVDTMLMFNLLLAVPVNSSLILVGDIFQLPSVGPGNVLSDIIASKAVKT
FSLTRIFRQAEQSPIVMNAHAIRNGEMPCLENSSDGLSEFYFIESASPERVVATIVELCS
NRIKKAFPHVDEIQVLTPMHKGEAGTINLNQKLQQVLNKAAGGIEARGLTFKTGDKVMHL
KNNYQKEVFNGDIGIVHEVVKSEGRLSVDYDGRVVDYDLLELDELTLAYAVSVHKSQGSE
YSAVVIAMTVQHYPLLQRNLLYTAMTRGKNLVIVVGSRRSMEIALHNNRTDCRLSGLCRR
LEMPEMDSRGVES
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggattctgcaacagcagcaggggtctttaaaagaaccatgatcgttctccagggaacc
cttgagcggatcacctttcgcaacgaggaaaatcactataccatcgcaaaaataaagacc
cgggagacccgggacgccgttgtggtggtgggtaccatgcccggggtcaatgaaggagaa
acccttaaacttacggggcagtgggtggcccatcccaagtatggagatcagtttaaggtc
gaccggtttgaggttacactccctgcaaccgtcgcaggcatcagacgctatctgggctcc
gggatcatcaagggcattggcatggccatggccaaacggattgtagagcagtttgaggaa
cgttcccttgaggtcattgaaaacgagcccgaacgactcagggaaattccagggattgga
aaatcaaaggccgacctgatcaccagggcctgggacaagcaccacgccgtcagaaaggtg
atgcgttttctccaggaccatgacgtgggaattgcccatgcatcggccattctgaaatac
tatggcaccgacagcctcaatatcctcaagcataacccctactccgtatcaaaggacgtt
cctgaggcaggttttgaggtggcggacgccattgcccttaaggccggttttaaaccggat
gatcctgaacggatcaaggcctgcctcttgtttctcctgtgcaaaaaagagtgcgacggc
cacgtgtttgcagaatttgaggcattgaatctgggctgtgagtcactcaccggggcaggc
agggaagatgttgaaaaggccctgggggccctggccgatgccggcgaggttgttgtggaa
caggatcaggtttatctcaagcgactccacatggcggaaaagggaattgctgaaaggata
cgggcaatgctttgtgtgcccattaatcctgttgacctttccgacgaagccatcaccatg
gaggtggccacaaggcttgctgtaaagctttcccaggagcagattgatgtagtaaaacag
gtgatggcccaccgggtggtggtcataacgggtgggccgggaacgggaaagaccaccctg
atccgggctgtttgtgctgttttgaaaaaacttcgcaaaaccgtgacccttgccgctccc
acgggcagggccgcaagaaggctctcccaggtgacagataaaaaggcatccaccctccat
cgcctgctgctgtgtgatcccgacaccggggagtttgcaaggaatctgtccaaccccctt
gattcggacgtggtcatcgttgatgaggcatccatggtggacaccatgctcatgtttaat
cttcttctggccgtgcctgtaaattcaagtcttattctggtgggggatatatttcagctt
ccttcggtggggccgggcaatgtgctctccgacatcattgcatccaaggcggtcaagacc
ttcagcctgacccggattttcaggcaggcggaacagagccccattgtcatgaacgcccac
gccatccggaacggtgaaatgccctgccttgagaacagctcagacgggctgtcagagttt
tatttcatcgagagcgcctcgccggaacgggtggtggcaaccattgtggagctgtgcagc
aaccgcatcaaaaaggcctttccccatgtggacgaaatccaggtgctgacccccatgcac
aagggcgaggctggaaccatcaatctcaaccagaagctgcagcaggtgctcaacaaggct
gccggcggcattgaggcaaggggattgaccttcaagaccggcgataaggtgatgcacctg
aagaacaactaccagaaagaggtgttcaacggcgatatcggcattgtccacgaggtggtg
aaatcagagggaaggttgtccgtggactatgacggacgggtggtggactatgacctgctc
gagcttgatgagctgacccttgcctatgccgtgtcggtccacaaatcccaggggtcggaa
tactcggccgtggtcattgccatgacggttcagcactatccccttctccagagaaatctg
ctgtacacggccatgacccgggggaaaaatcttgtcattgtggtgggatcaagaagatcc
atggagattgccctgcacaacaaccgcaccgattgcaggctttccggactctgcagacgg
ctggaaatgccggagatggattcacgtggggttgaatcttga
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