Candidatus Desulforudis audaxviator: Daud_0477
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Entry
Daud_0477 CDS
T00655
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dau
Candidatus Desulforudis audaxviator
Brite
KEGG Orthology (KO) [BR:
dau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dau03016
]
Daud_0477
Enzymes [BR:
dau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Daud_0477
Transfer RNA biogenesis [BR:
dau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Daud_0477
Prokaryotic type
tRNA splicing ligases
Daud_0477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACA59023
UniProt:
B1I1S1
LinkDB
All DBs
Position
514288..515709
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AA seq
473 aa
AA seq
DB search
MELVRDGKNRYRLVRTGKMRVDAVVYVNEVLLPLLRDDKSLEQLAHAAMLPGVINPVVGM
PDIHEGFGLPIGGVMAVGEDGVISAGAVGMDINCGVRLIRTDLRVREVPVPQLKNLMLTV
EDYVPTGVGKKSKHGELSRRLFERVARTGVRALVEQGVGAAADLEYIEEGGCLAGADLDA
VSREAYKRGETQLGTLGGGNHFIEFQEVAELLEPALAERWGLFPGQLTVMIHTGSRGFGH
QICTDFSRSHVTAAKKYGIELPNKGLACAPSNSPEGRQYFQAMACAVNFAFANRHLISHD
VGRAFADVFRKEPEKLGFGLVYDVAHNIAKWERHGGRKVLVHRKGATRALPPGHEDNPRP
YRETGHPALIPGSMGTSSYVLAGTERAAATFFSVNHGAGRVLSRGAAERTISREQFEESM
GAVLYNIRNFKEIVDESPLAYKDVDQVVQTLAEIGLTRKVARLRPLAVIKGKD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtccgggacggcaaaaaccgctaccgtcttgtccgcacgggcaagatgcgg
gtggacgcggtggtctacgtcaacgaggtgctgctgccgctgctgcgggatgacaagagc
ctggagcaactggcccacgcggccatgctgcccggggtgatcaacccggtggtcggcatg
cccgacatccacgagggtttcggcctgcccatcggcggcgtgatggcggtgggtgaggac
ggcgtgatttcggccggggctgttgggatggacataaactgcggcgtccgcttgatccgc
accgatctgcgggtgcgggaggtccccgtcccgcagctcaaaaacctgatgctcaccgtc
gaggactacgtgcccacgggggtgggcaagaaaagcaagcacggggagctctcgcggcgg
ctctttgagcgagtggccaggaccggggtccgcgccctggtggaacagggtgtgggtgcc
gcggccgacctggaatatattgaagagggcggctgcctggcgggcgccgatctggacgcc
gtgagccgcgaggcctacaagcgcggcgagacgcagttgggcacgctggggggcggcaac
cacttcatcgaattccaggaggtggctgaactcctagagcccgcgctggccgaacgttgg
ggactcttccccggacagctgacggtgatgattcacaccggtagccgcggtttcgggcac
cagatctgcaccgacttcagccggagccacgtgacggccgccaagaagtatgggatcgaa
ctgcccaataaagggttggcctgcgctccgagcaactccccggaggggcggcagtatttt
caagccatggcctgcgcggtcaacttcgcgtttgccaaccggcacctgatcagtcacgac
gtcggccgcgccttcgccgacgtattccggaaagagccggagaaactgggcttcgggcta
gtttacgacgtggcgcacaacatcgccaagtgggagcgccacggggggcggaaggtgctg
gtgcaccgcaagggggcgacccgggcgctgccgcccgggcacgaggacaacccccgtccc
taccgggagaccggacacccggccctcatcccgggcagcatgggcacttcctcgtacgtg
ctggccggtaccgagcgggcggcggcgacctttttctcggtcaaccacggggccgggcgg
gtgctttcgcggggcgcggcggaacgcaccatcagccgcgagcagttcgaggaatccatg
ggggcggtgctgtacaacatccgcaatttcaaggaaatcgtcgatgagtcgccgctcgct
tataaagacgtcgaccaggtggtccagaccctggccgaaatcggactaaccaggaaggta
gcccggctgcggcccctggcggtcatcaagggaaaggactga
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