Candidatus Desulforudis audaxviator: Daud_0562
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Entry
Daud_0562 CDS
T00655
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
dau
Candidatus Desulforudis audaxviator
Pathway
dau03030
DNA replication
dau03430
Mismatch repair
dau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Daud_0562
03430 Mismatch repair
Daud_0562
03440 Homologous recombination
Daud_0562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dau03032
]
Daud_0562
03400 DNA repair and recombination proteins [BR:
dau03400
]
Daud_0562
Enzymes [BR:
dau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Daud_0562
DNA replication proteins [BR:
dau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Daud_0562
DNA repair and recombination proteins [BR:
dau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Daud_0562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
RNase_T
DEAD
ResIII
DNA_pol_A_exo1
DEAD_2
RNase_H_2
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACA59103
UniProt:
B1I276
LinkDB
All DBs
Position
600494..603259
Genome browser
AA seq
921 aa
AA seq
DB search
MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLD
DADLAERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVL
PGLPSYRLELLCAHLDLPERPGHRAMEDARAAAGLFTALLERFCRLEFTTQATVHRILSQ
TPGSPWFPLVDAAVRLGIKTLPDHGIQAAGDGDWPAAVPAVGAGVKTVPGFGPQAVEAFL
GPGGVLTRHFADFEYRRPQMQVALAVGRALEEQTVLTVEAGTGTGKSFAYLVPAALWALD
GGRRVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRRWGAAVNEQSF
LPDEGFLYARIAVWLARTKTGDRAELSLRPEEKGFWDGVAAGDWGCAHAYCRFNSVCFLQ
RARRAAEQAHLVITNHSLLLSDLKMENRLLPAYDALVLDEAHHLEGVATEQLGTTVSRGA
LERWVEGLNRLTGRIGEFYPDNRDEFLRDGEALLAAVRRFFALLGARLRRRELPEEDFAA
ERLGPRALDACPETAGSYLELAGSLKAYVQRLSRAVERLTDSTVPAVQEELRVGLEQELA
VGKRLASDLEFVYEAADPGYVFWLEGGGRQTAEGVLRAAPVHVGELLHDGFFRSGKPVIL
TSATLTVQSSFSFFDERVGLEHLPRDLRGSLIVGSPFAYAEQALLYVVTDLPDPGDGDGA
YLDAVSDALGRIVGVTRGRTLALFTAHKALRTAYRRLKPVLEKQGLELLGHGLDGGRARL
LQYFRNTPQAVLFGASSFWEGVDVPGDALSCLVIVKLPFEPPNRPVLQARREEVRRRGRS
DFNDLCLPQAVLRLKQGFGRLIRTTADRGVVIILDNRLVRKRYGALFLESLPAAPMHGSL
EAGLEATAAFLFDGTFAASKP
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccgcacgtttgtggtgctggacttggaaaccaccggcctcgatcctcaagcagac
gagattgttgaggtcggcttggtgcgtgtcgaggacgggaagcccggagcggttttccac
gccctggtgcgcccctcgcgacctttgccggcgcggatcaagagcctgaccggcctggac
gatgccgacctggcggaaaggccggattggtccgaagtgcgcccggcggtgaccgccttc
ctcgggaatgagccggtggtcgggcaccacgtgcattttgacctggccttcctggaaagg
cacgccgggtaccgggcaacgcaggcgtacgacaccgtggacctggcgcggctggtgctg
cccggactgccgtcgtaccgcctggagttgctgtgtgcgcacctggacctgcctgaacgg
ccgggccaccgcgccatggaggacgcccgggcggcggccgggctgttcacggcgctcctg
gaaaggttttgccgcctcgaattcaccacccaggccacggtgcaccgcatcctgtcccag
acccccggttctccctggttcccgctggtggacgcggcggtgcggttggggatcaagacc
cttccggaccacggaatccaggcggcaggcgacggtgattggcccgccgcggttccggcg
gtcggggccggggtcaagaccgtacccgggttcggcccgcaggccgttgaagcgttcctg
gggcccggcggtgtgctgacccgtcacttcgccgactttgaataccggcggccgcaaatg
caggttgcactggcggtgggccgggcgctggaggagcagaccgtcctcacggtggaagcc
ggcaccgggaccggcaagtctttcgcctacctggtgccggccgcgctctgggccctggac
gggggacgccgggtggtggtgtcgacccatacggtcaaccttcaggaccagttgatggaa
aaagacctaccgcttctcggccgggcgctagacgcgccgctcaagaccgtgctcctgaaa
ggccgggggcactatctctgcctgcggcgttggggagcggccgtgaatgaacagagcttt
ttacccgacgagggcttcttgtatgcccgcattgcggtgtggctggcccggacgaaaacc
ggagaccgggccgaactcagcctgcggccggaggaaaagggattctgggacggagtggcc
gcgggagactggggctgcgcgcacgcgtactgccgtttcaacagtgtctgtttcttgcag
cgggcccggcgggccgccgaacaggcgcacctggtgatcaccaaccattcactcctgctt
tccgacctgaagatggaaaaccgactgctgccggcatacgacgccctggtgctggacgaa
gcacaccacctcgagggggtggccaccgagcaactggggaccaccgtatcgcggggcgcg
ctggaacggtgggtggaggggctgaaccggctgaccggaagaatcggcgagttctacccg
gacaaccgggatgagtttctccgggacggggaggcactgctggcggcggtacggcgtttt
ttcgccctgctgggtgcgcgtctgcggcggcgggaacttccggaggaagactttgcggcg
gagcgcctcggtccgcgggccctggacgcgtgcccggaaacggcgggaagttaccttgaa
cttgccgggagtctgaaagcctacgtgcaacggctgtctagggcggtcgagcggctgacc
gacagcaccgtgccggcggttcaggaggaactgcgggtggggctcgagcaggagttggcg
gttggcaagcgcttggccagcgacctggagttcgtatacgaggccgccgatcccgggtat
gttttctggctcgagggcggggggcggcagaccgccgagggcgtgctccgcgcggcgccg
gtccacgtaggggagctcttgcacgacggcttcttccgctccggcaagccggtcattctc
acttcggccacactcaccgtccaaagttcgttctccttttttgacgagcgggtggggctt
gagcatttgccgcgggacctgcggggcagcctgatcgttggttctcctttcgcctatgcc
gaacaggccctgctgtacgtggtgaccgacctgcccgacccgggagacggggacggggcc
tacctggacgccgtcagcgatgccctcgggcggatcgtcggggtcacccggggccggacg
cttgcactatttaccgcacataaagcgttgcgcaccgcatatagaagactgaaacccgtc
ttggaaaagcaaggcttggaactgttgggtcacggcctggacggggggcgggcgcgtctt
ttgcagtatttccgcaacacaccccaggcggtgctgtttggggcctccagtttttgggaa
ggggtggacgttccgggggacgcgctgtcctgcctggtgattgtgaaactcccgtttgaa
ccgcccaaccgccctgtgctccaggcgcggcgcgaggaggtccgccggcggggccggagt
gacttcaacgacctgtgcctaccgcaagccgtgctccgcctgaaacagggttttggacgc
ctgatccgtaccaccgcggaccggggcgtggtgattattttggataaccggctggtacgg
aaaaggtatggcgccctgtttttggagtccctgccggcggcgccgatgcacgggtccctg
gaggcagggctggaagcgacggccgcgtttctttttgacggcacgtttgcggcttcaaag
ccataa
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