Candidatus Desulforudis audaxviator: Daud_1404
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Entry
Daud_1404 CDS
T00655
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dau
Candidatus Desulforudis audaxviator
Pathway
dau03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Daud_1404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dau03400
]
Daud_1404
Enzymes [BR:
dau01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Daud_1404
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Daud_1404
DNA repair and recombination proteins [BR:
dau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Daud_1404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Auto_anti-p27
eIF-5_eIF-2B
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ACA59913
UniProt:
B1I4C1
LinkDB
All DBs
Position
1489828..1490658
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AA seq
276 aa
AA seq
DB search
MPELPEVETIVRDLGARLTGLMVERAEVLLPKVVAAPAPEEFARLIAGRKILGLSRRGKY
ILIELSRGWVLILHLRMTGQLVYTTVLEPFPKHTHLVLHLDQGVLRFTDLRQFGRASLVP
AREVRRVPGLRELGVEPLGAEFVKEDFIRKLARSRRMIKPLLLDQTFLTGLGNIYTDEAL
HRAGIHPERRAADLDTREAGTLYRAIREVLAEGVAFRGTSVQHYVDGSGQRGRFQEILRV
YGKKGVPCPVCGVPIERIRCGGRGTHYCPECQPFER
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcctgaagtagaaaccatcgtgcgcgatctgggggcccggctgaccgga
ctgatggtggaacgggccgaggtgctgctgcccaaggtggtggccgctccggcaccggaa
gaattcgcgcgcctgattgcggggcggaaaatcctgggcttgagccggcgtgggaagtac
atcctgatcgagttgtcgaggggctgggtgctgatcctacacctgcgcatgaccggacaa
ctggtgtacaccactgttttggagcctttccccaaacatactcatctggtccttcacctg
gatcagggggtgctgcggttcaccgacctgcgccagttcggccgggccagcctcgtgccc
gcgcgggaggtgcggcgcgtgcccgggcttcgggaattgggggtggaaccgctcggtgcc
gaattcgtgaaggaagatttcatccgcaagctggcccggtcacggcggatgatcaagccc
ctgctcctcgaccagaccttcctgaccggattgggaaacatctacaccgacgaggcgctg
caccgtgccgggattcaccccgaacggcgcgccgccgacctggacacccgtgaggcgggg
accctgtaccgggcgatccgggaagtgctggcggagggagtggcctttagaggcaccagt
gtccagcactacgtcgacggttccgggcagcggggccggtttcaggagatcctgcgggtc
tacggcaaaaagggggtcccctgcccggtctgcggcgtgccgattgagcgcatccggtgc
ggggggcgcggcacccactactgcccggagtgccaaccttttgagaggtga
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